Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2091
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   1.8  
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                27   5.4  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 216 PVIYLRCGSEEFCDCQWNTKS 154
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 216  PVIYLRCGSEEFCDCQWNTKS 154
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 98  DNSRLNCELKYLANKIRDRSCNSR 27
           D   +NC + Y+AN +RDR C +R
Sbjct: 93  DKEMVNCVVTYVANYLRDR-CTAR 115


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 77  RNLVDYYQSRQSDFWKIIGKSERRIIDFVFHWQSQNSSEPHLR 205
           R L DY ++++  F +    S   ++D + + ++ N+ +PHLR
Sbjct: 775 RCLEDYLETKRLVFSRFYFLSNEDLLDILANNKNPNAVQPHLR 817


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,496
Number of Sequences: 59808
Number of extensions: 180052
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)