Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2090
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   0.70 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   2.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   5.0  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   5.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.6  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 308 FGNIFCPFLCKQVNDLPS 361
           +GN+  P LCK +  +P+
Sbjct: 256 YGNVKIPVLCKLIQSIPT 273


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 SYFDRKNVRPIYKVHHFCSALAIYF 323
           +YF    V P+  +  FC+AL I++
Sbjct: 52  TYFIYAFVAPVKCLAFFCTALVIFY 76


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 SYFDRKNVRPIYKVHHFCSALAIYF 323
           +YF    V P+  +  FC+AL I++
Sbjct: 285 TYFIYAFVAPVKCLAFFCTALVIFY 309


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 SYFDRKNVRPIYKVHHFCSALAIYF 323
           +YF    V P+  +  FC+AL I++
Sbjct: 285 TYFIYAFVAPVKCLAFFCTALVIFY 309


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 323 CPFLCKQVNDLPS 361
           C   C+Q ND PS
Sbjct: 310 CASTCEQANDTPS 322


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 323 CPFLCKQVNDLPS 361
           C   C+Q ND PS
Sbjct: 310 CASTCEQANDTPS 322


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/37 (16%), Positives = 21/37 (56%)
 Frame = +3

Query: 216 VRIFVLIKVGISYFDRKNVRPIYKVHHFCSALAIYFV 326
           V + +L+    +YF +   + + K + +C+ + ++++
Sbjct: 294 VYVSLLLGPHPTYFGKTGRKTVLKTNKYCNFIILFYL 330


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 158 LRTAFLLFLHLKVIRDHTLSTYFRLDKSRYF 250
           +R+ F L     ++      TYFRL K++ F
Sbjct: 376 VRSVFFLSEIFGLVNLKYRETYFRLSKTKTF 406


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,611
Number of Sequences: 336
Number of extensions: 2172
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)