Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2090
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   6.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.6  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    24   8.7  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 401 VISMSLGNHLTLVERGDRSPVYTKKDKIYCQSGTKVVHFINWPNIFSI 258
           VI    GN+LTL E   R   Y K ++I  ++      FI   NI ++
Sbjct: 81  VIRNEHGNNLTLQEELLRHEAYEKNEEIANENDVDQGMFIQQNNILNM 128


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 396  FYEFG*PLNTGREGRSFTCLHKKGQNILPKRNKSG 292
            + +FG   N    G S+  +H+KG  ++   NK G
Sbjct: 1330 YIQFGNVFNLLHAGVSYIRIHQKGYGVVGVSNKYG 1364


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -2

Query: 357 GRSFTCLHKKGQNILPKRNKSGALYKLA*HFFYRNMKYLLLSRRKYVLSVWSRMTLR*RN 178
           G+ + C+ +   ++  +RN + A+  L    F R      + R+  + S++    +   N
Sbjct: 125 GKEYVCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDN 184

Query: 177 NRN 169
            RN
Sbjct: 185 ERN 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,772
Number of Sequences: 5004
Number of extensions: 32737
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)