Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2090
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    28   3.3  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   4.3  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   4.3  
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    27   7.5  
U40800-1|ABI18145.1|  150|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical
           protein F55A11.11 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 264 KNVRPIYKVHHFCSALAIYFVLFCVNR*TISPLDQC*VVTQTHRNDLGHATQLD 425
           K  +PI+ +H F S         C+ R  +   + C +   T    +GHA  +D
Sbjct: 176 KTYKPIFSMHEFTSMFGAKSQEQCIQRIMLVVKNICVIFRDTPALIIGHAVTMD 229


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 250 HISIEKMLGQFIKCTTFVPLWQYILSFFV*TGERSPLSTSVKWLPKLIEMT 402
           H+S+  +L  F+      P  ++ILSFF+ T   + + +  K  P  +  T
Sbjct: 299 HMSLHGLLSTFVILFIHRPYREFILSFFMQTSSAASVKSIAKLTPIKVGQT 349


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 389 SLGNHLTLVERGDRSPVYTKKDKIYCQSGTKVVHFIN 279
           S GN LT V+  +    YT  D++     TK+  F N
Sbjct: 428 SAGNQLTFVDENNTEQFYTMNDQVPMNLQTKINIFSN 464


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 389 SLGNHLTLVERGDRSPVYTKKDKIYCQSGTKVVHFIN 279
           S GN LT V+  +    YT  D++     TK+  F N
Sbjct: 428 SAGNQLTFVDENNTEQFYTMNDQVPMNLQTKINIFSN 464


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 228 VLIKVGISYFDRKNVRPIYKVHHFCSALA 314
           VL K   +Y  RKN++PI  V   C A A
Sbjct: 132 VLKKSSATYELRKNIKPIQNVFQCCGATA 160


>U40800-1|ABI18145.1|  150|Caenorhabditis elegans Hypothetical
           protein D2096.13 protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 348 FTCLHKKGQNILPKRNKSGAL 286
           F C+H +G N+L K + +G L
Sbjct: 14  FLCVHSRGDNVLTKFHLNGTL 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,535,919
Number of Sequences: 27780
Number of extensions: 183530
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)