Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YQ85 Cluster: Putative uncharacterized protein; n=1; ...    31   4.4  
UniRef50_A2F201 Cluster: RNase3 domain containing protein; n=1; ...    31   5.9  
UniRef50_Q0D008 Cluster: Predicted protein; n=1; Aspergillus ter...    31   7.7  

>UniRef50_Q4YQ85 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 121

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 216 LWKYMIFDECTCIIKFIFFSVPRSTRSPLLAFRNV 320
           L+ Y++  +  C+  FI FS+     +PL+ FRN+
Sbjct: 55  LFSYVLSPKSFCVFMFIIFSLSSFFSNPLIIFRNI 89


>UniRef50_A2F201 Cluster: RNase3 domain containing protein; n=1;
           Trichomonas vaginalis G3|Rep: RNase3 domain containing
           protein - Trichomonas vaginalis G3
          Length = 810

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 332 HNIGYIPKS*KRTPRG-TGNRKENKLYYACAFIENHVFPKT*RTLIYLCN 186
           H +  I +  +R P   T   K +KL Y    +   +FP+T ++L+YL N
Sbjct: 301 HKLSIIQQILQRIPEDFTSKLKNDKLMYPIEIMTEKLFPRTVQSLLYLFN 350


>UniRef50_Q0D008 Cluster: Predicted protein; n=1; Aspergillus
           terreus NIH2624|Rep: Predicted protein - Aspergillus
           terreus (strain NIH 2624)
          Length = 190

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 312 EKLEEDSSWNGEQKRK*TLLCMCIHRKSCISKDLTHSNI 196
           E  E+   WN ++ +K TL C   H  +C SK    S +
Sbjct: 138 EDTEDSEEWNEKELQKHTLPCSACHHGTCASKRFIASRL 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,322,572
Number of Sequences: 1657284
Number of extensions: 5636897
Number of successful extensions: 8649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8649
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)