Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   1.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   1.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   6.6  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 241 SSKIMYFQRPDAL*YIYVTFKPMQ*RVSLDSNRAYK 134
           +S+++ + RP+        F+P Q  VSL  NR+++
Sbjct: 38  NSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHE 73


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 241 SSKIMYFQRPDAL*YIYVTFKPMQ*RVSLDSNRAYK 134
           +S+++ + RP+        F+P Q  VSL  NR+++
Sbjct: 58  NSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHE 93


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 317 CTRYYAI*ITLFY 355
           C  YY I +T FY
Sbjct: 77  CFNYYVIVVTTFY 89


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 186 HLNQCNNECR*ILIEPIKPLTFSSPC 109
           H+N  N+     L+  +KP     PC
Sbjct: 311 HMNTTNHAIVQSLVNSMKPKEVPGPC 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,148
Number of Sequences: 336
Number of extensions: 1656
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)