Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   2.6  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   8.0  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    24   8.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.0  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 243 IHRKSCISKDLTHSNIFM 190
           +HR+ C+ +DL   NIF+
Sbjct: 139 LHRQGCVHRDLKLENIFL 156


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 81  FILPTCRFIYMVTKKLRVL*ALLESNDTRYCIGLNVT 191
           F + + +F Y++ +  ++   L+  N+  Y +GLN T
Sbjct: 43  FFIESLQFHYLINQSEKISLKLIFWNELVYLLGLNDT 79


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 210 SGLWKYMIFDECTCIIKFIFFSVPRSTRSPL 302
           +G W+    DE  CI+ +  F   ++   P+
Sbjct: 319 NGAWRRFTGDEVGCILAYFIFQEYKNVGKPI 349


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  PFYLHGDEKVKGFIGSIR 151
           PF LHG  +V  F+ S+R
Sbjct: 148 PFVLHGPSEVHQFLSSMR 165


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 102 NGRWVE*ICCFKFNYLY 52
           + R V+ +CCF  N++Y
Sbjct: 279 HSRIVQTLCCFSLNFIY 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,422
Number of Sequences: 5004
Number of extensions: 26292
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)