Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274...    28   2.5  
04_04_1286 + 32387687-32387908,32388046-32389494                       26   7.6  
02_04_0456 - 23089507-23090607,23091561-23091635                       26   7.6  

>01_06_0703 -
           31326790-31326894,31327015-31327126,31327324-31327445,
           31327573-31327658,31327783-31327901,31327991-31328053,
           31328142-31328221,31328801-31328921,31329040-31329125,
           31329318-31329413,31329510-31329584,31329869-31330210
          Length = 468

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 343 NLNGIISGTFRKAR-RGLLVERGTEKKINFIMHVHSSKIMYFQ 218
           N NGI  GTFRKA  RG+LV     KK++  + +  +K+  F+
Sbjct: 165 NGNGISKGTFRKATWRGILV---AVKKLDDDLIMDENKVQAFR 204


>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 302 KRTPRGTGNRKENKLYYACAFIEN 231
           +R+P    N ++N LY+ C F +N
Sbjct: 237 ERSPAVQSNLRDNSLYHYCVFSDN 260


>02_04_0456 - 23089507-23090607,23091561-23091635
          Length = 391

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 259 FIMHVHSSKIMYFQRP 212
           FI++VH  K+ YF RP
Sbjct: 61  FIIYVHGQKVTYFLRP 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,284,989
Number of Sequences: 37544
Number of extensions: 144909
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)