Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   2.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   2.6  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    22   6.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    22   6.0  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    22   7.9  

>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC++KF
Sbjct: 157 EYFPFDEQTCVLKF 170


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC++KF
Sbjct: 153 EYFPFDEQTCVMKF 166


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 225 YMIFDECTCIIKF 263
           Y  FD+ TCI+KF
Sbjct: 157 YFPFDQQTCIMKF 169


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC +KF
Sbjct: 153 EYFPFDEQTCFMKF 166


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  +DE TC++KF
Sbjct: 159 EYFPYDEQTCLMKF 172


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,255
Number of Sequences: 2352
Number of extensions: 7298
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26224815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)