Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical...    29   0.95 
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    27   5.1  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.19 protein.
          Length = 609

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 SGLWKYMIFDECTCIIKFIFFSVPRSTRSPLLAF 311
           S LWKY I  + T  ++F FF   RS    L  F
Sbjct: 576 SQLWKYKIEVKLTFYVQFFFFQFSRSVDKVLFIF 609


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
            ZK688.5b protein.
          Length = 1595

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 282  RSTRSPLLAFRNVPDIMPF 338
            R T+S LL+FRN+ D  PF
Sbjct: 1154 RRTQSGLLSFRNLEDFRPF 1172


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
            ZK688.5a protein.
          Length = 1620

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 282  RSTRSPLLAFRNVPDIMPF 338
            R T+S LL+FRN+ D  PF
Sbjct: 1154 RRTQSGLLSFRNLEDFRPF 1172


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 289 VERGTEKKINFIMHVHSSKIMY 224
           +ERG   K+N+I+   SS ++Y
Sbjct: 17  IERGKYNKMNYILDAKSSNVIY 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,678,991
Number of Sequences: 27780
Number of extensions: 146820
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)