Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2089
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.62 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   0.82 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   3.3  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC++KF
Sbjct: 158 EYFPFDEQTCVLKF 171


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC++KF
Sbjct: 154 EYFPFDEQTCVMKF 167


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 225 YMIFDECTCIIKF 263
           Y  FD+ TCI+KF
Sbjct: 157 YFPFDQQTCIMKF 169


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE TC +KF
Sbjct: 150 EYFPFDEQTCFMKF 163


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FDE +CI+KF
Sbjct: 163 EYFPFDEQSCIMKF 176


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 10  RTNEEINDDYNFD 48
           R  + +NDD+NFD
Sbjct: 382 RMQKIVNDDFNFD 394


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 222 KYMIFDECTCIIKF 263
           +Y  FD+ TC +KF
Sbjct: 150 RYFPFDQQTCFMKF 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,284
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)