Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2088
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 161 2e-40
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 161 2e-40
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 74 4e-14
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 3e-07
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 2.0
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 2.7
10_08_0549 + 18696903-18698330 28 3.6
07_03_0830 + 21801228-21801671,21802216-21803103 28 3.6
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 4.7
01_01_0357 - 2816650-2817897 27 4.7
06_03_1146 - 28004896-28005554,28005664-28005844 27 8.2
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 27 8.2
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 161 bits (392), Expect = 2e-40
Identities = 74/90 (82%), Positives = 82/90 (91%)
Frame = -1
Query: 369 KLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 190
K+ + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 112
Query: 189 DIPGVRFKVVKVANVSLLALYKEKKERPRS 100
DIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 161 bits (392), Expect = 2e-40
Identities = 74/90 (82%), Positives = 82/90 (91%)
Frame = -1
Query: 369 KLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 190
K+ + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 223 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 282
Query: 189 DIPGVRFKVVKVANVSLLALYKEKKERPRS 100
DIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 283 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 158 bits (383), Expect = 2e-39
Identities = 72/88 (81%), Positives = 80/88 (90%)
Frame = -1
Query: 369 KLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 190
K+ + KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 112
Query: 189 DIPGVRFKVVKVANVSLLALYKEKKERP 106
DIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 113 DIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 74.1 bits (174), Expect = 4e-14
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = -1
Query: 369 KLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 217
K+ + KQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -1
Query: 237 DEVLVAGFGRKGHAVGDIPGVRFKVVK 157
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 298
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 206 LRPNPATSTSSFSSMWFRQPSRGT 277
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>10_08_0549 + 18696903-18698330
Length = 475
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 265 VTGDECGHFLSVLNELYTDAFADGRVGLLKLIHQLSRGGA 384
VT CG F+ + +T A A G V L + +++RGGA
Sbjct: 151 VTRLACGGFILAVRLHHTMADAQGLVQFLGAVAEMARGGA 190
>07_03_0830 + 21801228-21801671,21802216-21803103
Length = 443
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 265 VTGDECGHFLSVLNELYTDAFADGRVGLLKLIHQLSRGGARYPIRPI 405
VT CG F+ L + A A G V LL+ I ++SRG + P+
Sbjct: 149 VTRLRCGGFVFGLQICHNIADAAGTVQLLRAIGEMSRGMPAPTVPPV 195
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 69 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 218
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 189 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 275
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 176 TPGMSPTA*PLRPNPATSTSSFSS 247
TP SP+ P+ P PA +TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 201 DLYDRIPPLVLRRFLRCGLGNRHGGR 278
++Y + P LRR L GLG GG+
Sbjct: 57 EVYRAVGPRFLRRLLNTGLGKVEGGK 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,165
Number of Sequences: 37544
Number of extensions: 255194
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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