Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2088
(423 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 169 3e-42
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 169 3e-42
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 169 3e-42
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 5e-27
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 46 4e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 46 4e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 46 4e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 46 4e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 46 4e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 46 4e-05
AL442071-1|CAH73668.1| 5430|Homo sapiens microtubule-actin cross... 29 6.5
AL365277-7|CAI16417.1| 5430|Homo sapiens microtubule-actin cross... 29 6.5
AL355477-1|CAH70156.1| 5430|Homo sapiens microtubule-actin cross... 29 6.5
AL137853-1|CAI21814.1| 5430|Homo sapiens microtubule-actin cross... 29 6.5
AK127519-1|BAC87016.1| 1062|Homo sapiens protein ( Homo sapiens ... 29 6.5
AF325341-1|AAL39000.1| 4631|Homo sapiens macrophin 1 isoform 2 p... 29 6.5
AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein. 29 6.5
AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein A... 29 6.5
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 169 bits (412), Expect = 3e-42
Identities = 83/100 (83%), Positives = 87/100 (87%)
Frame = -1
Query: 399 ANWVPGPPSRKLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVA 220
A+ G K+ + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVA
Sbjct: 44 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVA 103
Query: 219 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 100
GFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 104 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 169 bits (412), Expect = 3e-42
Identities = 83/100 (83%), Positives = 87/100 (87%)
Frame = -1
Query: 399 ANWVPGPPSRKLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVA 220
A+ G K+ + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVA
Sbjct: 44 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVA 103
Query: 219 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 100
GFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 104 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 169 bits (412), Expect = 3e-42
Identities = 83/100 (83%), Positives = 87/100 (87%)
Frame = -1
Query: 399 ANWVPGPPSRKLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVA 220
A+ G K+ + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVA
Sbjct: 44 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVA 103
Query: 219 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 100
GFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 104 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 119 bits (286), Expect = 5e-27
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = -1
Query: 279 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 103
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 46.4 bits (105), Expect = 4e-05
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = -1
Query: 357 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 178
K K+PNSA RKC RV+L G++ F+P +G + ++E+ VLV G GR D+PG
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPG 120
Query: 177 VRFKVVK 157
V+ VV+
Sbjct: 121 VKLTVVR 127
>AL442071-1|CAH73668.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 568
>AL365277-7|CAI16417.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 568
>AL355477-1|CAH70156.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 568
>AL137853-1|CAI21814.1| 5430|Homo sapiens microtubule-actin
crosslinking factor 1 protein.
Length = 5430
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 568
>AK127519-1|BAC87016.1| 1062|Homo sapiens protein ( Homo sapiens
cDNA FLJ45612 fis, clone BRTHA3025073, highly similar
to Actin cross-linking family protein 7. ).
Length = 1062
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 692 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 728
>AF325341-1|AAL39000.1| 4631|Homo sapiens macrophin 1 isoform 2
protein.
Length = 4631
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 351 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 387
>AF141968-1|AAF06360.1| 5373|Homo sapiens trabeculin-alpha protein.
Length = 5373
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 497 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 533
>AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein
ABP620 protein.
Length = 5430
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQP 265
FT+L+ P + T L+ P T +T S S+ WFR+P
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKP 568
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,896,374
Number of Sequences: 237096
Number of extensions: 1392443
Number of successful extensions: 5425
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5425
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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