Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2088
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 162 1e-40
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 38 0.004
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co... 29 1.8
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 3.2
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 3.2
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z92782-8|CAB07185.1| 197|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical pr... 27 7.3
AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical ... 27 7.3
AF025467-6|AAB71037.2| 95|Caenorhabditis elegans Hypothetical ... 27 7.3
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 162 bits (393), Expect = 1e-40
Identities = 76/100 (76%), Positives = 85/100 (85%)
Frame = -1
Query: 399 ANWVPGPPSRKLVYKLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVA 220
A+ G K+ + KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+
Sbjct: 44 ASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVS 103
Query: 219 GFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 100
GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 104 GFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = -1
Query: 351 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRK 205
K+PNS RKC V+L G +V A++P G ++++E+ +VLV G GR+
Sbjct: 89 KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG-GRR 133
>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore complex
protein protein15 protein.
Length = 1127
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -1
Query: 360 YKLKQPNSAIRKCVRVQLIKN--GKKVTAFVPRDGCLNH---IEENDEVLVAGFGRKGHA 196
YK + P RK + +++K G + A + + L ++ NDE V GF R H
Sbjct: 904 YKRRYPEMKHRKRIPTEILKICFGNDLDAMMSVEDMLEWNMAVQPNDEASVEGFARAFHL 963
Query: 195 VGDIPGV 175
+ D+ V
Sbjct: 964 LADLLAV 970
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 164 TLKRTPGMSPTA*PLRPNPATSTSS 238
T RTP +P A P RP P+ S+++
Sbjct: 38 TTMRTPAATPAAPPTRPTPSRSSAA 62
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 164 TLKRTPGMSPTA*PLRPNPATSTSS 238
T RTP +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 285 TAFVPRDGCLNHIEEN 238
T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668
>Z92782-8|CAB07185.1| 197|Caenorhabditis elegans Hypothetical
protein F14F8.9 protein.
Length = 197
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -1
Query: 261 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 154
C N + E+DEV+ G+ H+ +P + K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164
>Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 269 RGTNAVTFFPFLMSCTRTHLRMAELGCLSLYTNFLE 376
+GT+ F PFL + ++ +AEL C S++ F E
Sbjct: 287 KGTDGSLFHPFLSKHEKLYVYVAEL-CRSIWLEFKE 321
>AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 269 RGTNAVTFFPFLMSCTRTHLRMAELGCLSLYTNFLE 376
+GT+ F PFL + ++ +AEL C S++ F E
Sbjct: 287 KGTDGSLFHPFLSKHEKLYVYVAEL-CRSIWLEFKE 321
>AF025467-6|AAB71037.2| 95|Caenorhabditis elegans Hypothetical
protein R148.2 protein.
Length = 95
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 249 IEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKKERPR 103
+E+N +++ G G V D GVR K+ +ANV L + K P+
Sbjct: 5 LEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,248
Number of Sequences: 27780
Number of extensions: 206879
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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