Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2087
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   3.6  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   3.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   6.3  

>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 130 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 249
           S I  PW T+    + ISS  GL+   L ++L+ H   ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 500 TVSGTVEVVEPTAGVVTETVVSGSVGYTTAYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 558

Query: 441 IGATT 455
           +G TT
Sbjct: 559 VGYTT 563



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 535 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 593

Query: 441 IGATT 455
           +G TT
Sbjct: 594 VGYTT 598



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 570 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 628

Query: 441 IGATT 455
           +G TT
Sbjct: 629 VGYTT 633



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 605 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 663

Query: 441 IGATT 455
           +G TT
Sbjct: 664 VGYTT 668



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 640 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 698

Query: 441 IGATT 455
           +G TT
Sbjct: 699 VGYTT 703



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 675 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 733

Query: 441 IGATT 455
           +G TT
Sbjct: 734 VGYTT 738



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G   ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 710 TVSGTVEVVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 768

Query: 441 IGATT 455
           +G TT
Sbjct: 769 VGYTT 773



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +3

Query: 261 TYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 440
           T  G+  ++  T+ V +  ++S  +GY   +    +    V  + P++ +   T + SG 
Sbjct: 465 TVSGEHIIVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGTVEVVEPTAGVVTET-VVSGS 523

Query: 441 IGATT 455
           +G TT
Sbjct: 524 VGYTT 528


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 KLLSWLRPPTFLRFL*SRNLLGIT 345
           K +SW+R P FL FL +    G+T
Sbjct: 360 KWISWIRIPKFLGFLKASENTGLT 383



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 275 NSSPGFDLLRFFDSFNLATYWVLRSFY 355
           +S+ GF  LRFF+   +A  W   +FY
Sbjct: 254 SSASGFIALRFFNGLAIAGMWPGFAFY 280


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 258  TTYHGKTPLLASTSYVSSIPLISQPIGYYAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 437
            T  +  TP+ +ST+  +SIP+ S  +   +  I   +     + I  SS +  +T I S 
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323

Query: 438  PIGATT 455
             +  T+
Sbjct: 1324 TVVNTS 1329


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 311 DSFNLATYWVLRSFY 355
           +S NL  YW+L+S+Y
Sbjct: 10  NSANLMLYWILKSYY 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,109
Number of Sequences: 5004
Number of extensions: 36123
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)