Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2087
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0546 - 34646946-34647289,34647542-34647608                       30   1.2  
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    29   1.6  
02_05_0817 + 31994241-31995908                                         28   3.6  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    28   4.8  
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    28   4.8  
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    27   6.3  
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597...    27   6.3  
07_01_0590 + 4393242-4393469                                           27   8.4  

>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 176 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 265
           SFH  E+ CC CCV+  C + C   +   HL
Sbjct: 79  SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108


>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 176 SFHQEE--VCCTCCVYRSCIILCYFSRR 253
           SF+ E+  V C+CC++ SC ILC  + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614


>02_05_0817 + 31994241-31995908
          Length = 555

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 LRFL*SRNLLGITLILSRSALHNGP*ATSLLAPTSLPTPTSQVGL 441
           LR    R LL +  + S +A H+   ++  L PTS+P P  Q+ L
Sbjct: 8   LRLRHLRRLLAVAPLSSLAAAHSANRSSPRLNPTSVPPPPRQLHL 52


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 348 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPIGATTYTTPFRADRADPH 494
           +F+ + SPQ P    AP +      Y +  P G T+Y +P     A PH
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP--PGGAGPH 501


>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 376 GP*ATSLLAPTSLPTPTSQVGLLEPLPTRH 465
           GP  T  +APT  PTP    G   PLP RH
Sbjct: 22  GPSLTVTVAPTPPPTPLDPRGY--PLPRRH 49


>12_02_0849 - 23640091-23640279,23640537-23640677,23640756-23642203,
            23642300-23642372,23642452-23642572,23642689-23642791,
            23642979-23643052,23643140-23643285,23643368-23643476,
            23643580-23643704,23643989-23644342,23644440-23644503,
            23644581-23645032
          Length = 1132

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 415  PTPTSQVGLLEPLPTRHPFV-QTVPIR 492
            P PT +  ++EP+PTR P V + +P R
Sbjct: 921  PVPTRKPIVIEPVPTRKPIVTEPLPTR 947



 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 415 PTPTSQVGLLEPLPTRHPFV--QTVPIR 492
           P PT +  ++EP+PTR P      VP R
Sbjct: 887 PVPTRKPSVIEPVPTRKPMAIEPVVPTR 914


>08_02_0424 -
           16957793-16958089,16958215-16958601,16958737-16959735,
           16959840-16959994,16960082-16960169,16960241-16960344,
           16960424-16960646,16960839-16960923,16961006-16961397,
           16962841-16963005
          Length = 964

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 404 GARSDVAHGPLWRALLDKMSVI 339
           G    +A  P WRALLD+M+V+
Sbjct: 695 GMHPPIAPKPEWRALLDEMAVV 716


>07_01_0590 + 4393242-4393469
          Length = 75

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 476 CTKGCRVGSGSNRPTCDVGVGSDVGARSDVAHGPLW 369
           CT GC VG GS+    +  V +  G    +A G LW
Sbjct: 40  CTCGCEVGQGSSAAVAEEEVTTLRGG-GGIAVGQLW 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,953
Number of Sequences: 37544
Number of extensions: 272992
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)