Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2087
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 1.9
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 1.9
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 1.9
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 5.7
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 5.7
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 27 7.6
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 27 10.0
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 27 10.0
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 385 ATSLLAPTSLPTPTSQVGLLEPLPTRHP 468
+TS AP++ P PTS +LE PT P
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAP 127
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 385 ATSLLAPTSLPTPTSQVGLLEPLPTRHP 468
+TS AP++ P PTS +LE PT P
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAP 127
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 385 ATSLLAPTSLPTPTSQVGLLEPLPTRHP 468
+TS AP++ P PTS +LE PT P
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAP 127
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 385 ATSLLAPTSLPTPTSQVGLLEPLPTRHP 468
+TS AP++ P PTS +LE PT P
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAP 127
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 2465 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 2506
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 2487 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 2528
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 1308 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 1349
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 1286 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 1327
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 2465 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 2506
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFV 474
+ +S +HN AP++ S++G+++P P PFV
Sbjct: 2487 LAQQSFMHNSQQPQPFGAPSNASANQSRLGMIQPRPQPPPFV 2528
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 366 SPQWPVSYIAPSSYITPNTYIASGPIGA 449
SP WP SYI + P YI P+G+
Sbjct: 315 SPSWPYSYIGEQN---PCNYILDTPVGS 339
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFVQTV 483
++ R +N ++ + +P S+PTP S L+ H +QT+
Sbjct: 117 VIGRRVRNNSSDSSPISSPPSIPTPLSICKLMNLSEGDHKLLQTI 161
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 349 ILSRSALHNGP*ATSLLAPTSLPTPTSQVGLLEPLPTRHPFVQTV 483
++ R +N ++ + +P S+PTP S L+ H +QT+
Sbjct: 117 VIGRRVRNNSSDSSPISSPPSIPTPLSICKLMNLSEGDHKLLQTI 161
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 396 PSSYIT-PNTYIASGPIGATTYTT 464
PS+ +T PNT + S P ATT TT
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTT 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,751,818
Number of Sequences: 27780
Number of extensions: 211287
Number of successful extensions: 716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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