Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2081
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    35   0.005
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    30   0.14 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   0.44 
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   1.8  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   4.1  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.4  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    24   9.4  

>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 34.7 bits (76), Expect = 0.005
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
 Frame = +1

Query: 94  VTLATN--DSYGLGALVLAHSLRR---AGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 258
           +TL T+  D Y     VL + L+      S YP   L+   V E   +RLR   +E++ V
Sbjct: 81  LTLPTSEHDVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIERLRLDGAEIIMV 140

Query: 259 DVLDSRDAAHLAL---LQRPELGITFTKIHWWNLTQYEKCVFLDA 384
           D + + D     L   +        FTK+  +  TQ++K   LD+
Sbjct: 141 DQIKTEDLIESGLSIGMGSYRYQYMFTKLSVFEQTQFDKVCILDS 185


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = +1

Query: 112 DSYGLGALVLAHSL---RRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR-- 276
           D Y     +L H L   +   S YP V L    + +   D+L+   + V  VD L +   
Sbjct: 80  DWYYNSTRLLVHRLVKFKPTKSKYPVVVLAMKGIDQWKLDQLQEDGAIVKVVDPLYAHEV 139

Query: 277 --DAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
             D   +ALL      + FTK+  + + +Y++  FLD+
Sbjct: 140 VDDVNDIALLDS-RWSMMFTKLRVFEMYEYDRICFLDS 176


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 175  PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR 276
            P V + +P     + D L A +++V+T+DVLD R
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGR 1471


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 148 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 255
           +LR+A +  P V +   TV+E +RD    V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 112 DSYGLGALVLAHSLRRAGSVYPAVALI 192
           +S   G L L H+LR+ G+++P  A +
Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 289 LALLQRPELGITFTKIHWWNLTQYEK 366
           LA L +PE    F  I++  L  YEK
Sbjct: 118 LAYLSKPEESYNFLTIYFSTLLSYEK 143


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 231 AKTIPHSFTDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 82
           A+ IP+ F DG        +  +GA +R+G+++      V  G  + C++
Sbjct: 306 AELIPY-FRDGGVHGFARSMPTSGAIDRVGKYKGKNVYEVPTGWKFFCNL 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,240
Number of Sequences: 5004
Number of extensions: 24019
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)