Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2081
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 50 6e-07
07_03_1743 - 29167078-29167290,29167389-29168159 46 8e-06
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 45 2e-05
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 44 3e-05
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 44 5e-05
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 42 2e-04
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 41 3e-04
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 38 0.002
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 30 0.55
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 1.7
06_02_0308 + 14124373-14124706,14124888-14124910 28 2.9
01_05_0513 - 22864657-22867899 28 2.9
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 27 3.8
08_01_0793 - 7685702-7686955 27 6.7
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 50.0 bits (114), Expect = 6e-07
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 79 SNRAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 255
+ RA+VT LA + Y G + LA LR+ GS YP V + P V E+ R L + V
Sbjct: 21 ATRAYVTFLAGDGDYWKGVVGLAKGLRKVGSAYPLVVAVLPDVPESHRRILISQGCIVRE 80
Query: 256 VD-VLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
++ V + A+ I ++K+ W +YE+ V+LDA
Sbjct: 81 IEPVYPPENQTQFAMAYYV---INYSKLRIWEFVEYERMVYLDA 121
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 46.4 bits (105), Expect = 8e-06
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +1
Query: 85 RAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRL---RAVFSEVV 252
RA+VT LA + Y G + LA LRR S YP V + P V R +L V E+
Sbjct: 18 RAYVTFLAGDGDYWKGVVGLAKGLRRVRSAYPLVVAVLPDVPGEHRRKLVEQGCVVREIQ 77
Query: 253 TVDVLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
V +S+ +A I ++K+ W +YE+ V+LDA
Sbjct: 78 PVYPPESQTQFAMAYYV-----INYSKLRIWEFVEYERMVYLDA 116
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 45.2 bits (102), Expect = 2e-05
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +1
Query: 88 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 264
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S+ R L A +V +
Sbjct: 348 AYATILHSASEYVCGAISAAQSIRQAGSTRDLVILVDDTISDHHRKGLEAAGWKVRVIQR 407
Query: 265 LDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+ + A A + ++K W LT Y+K +F+DA
Sbjct: 408 IRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDA 442
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 44.4 bits (100), Expect = 3e-05
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 88 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 264
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S R L A +V +
Sbjct: 323 AYATILHSASEYVCGAITAAQSIRQAGSTRDFVILVDETISNHHRKGLEAAGWKVRIIQR 382
Query: 265 LDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+ + A A + ++K W LT Y+K +F+DA
Sbjct: 383 IRNPKAERDAYNE-----WNYSKFRLWQLTDYDKIIFIDA 417
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 43.6 bits (98), Expect = 5e-05
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +1
Query: 79 SNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 258
+ A+VTL D + LG VL S+R G+ V L++ VS+ R L+A V +
Sbjct: 32 TEEAYVTLLYGDEFVLGVRVLGKSIRDTGTRRDLVVLVSDGVSDYSRKLLQADGWIVSHI 91
Query: 259 DVLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+L + + + G+ +TK+ +N+T Y K V+LDA
Sbjct: 92 TLLANPNQVR----PKRFWGV-YTKLKIFNMTSYRKVVYLDA 128
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +1
Query: 100 LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRD 279
L ++D+Y GA+VLA S+RRAGS V L TVS+ L A + + +
Sbjct: 330 LHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPR 389
Query: 280 AAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
A + ++K W LT Y++ VF+DA
Sbjct: 390 AERGTYNE-----YNYSKFRLWQLTDYDRVVFVDA 419
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 41.1 bits (92), Expect = 3e-04
Identities = 31/101 (30%), Positives = 49/101 (48%)
Frame = +1
Query: 82 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 261
+ A+VTL D + LG VL S+R + V L++ VSE R L A V +
Sbjct: 37 DEAYVTLLYGDEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEADGFIVKHIT 96
Query: 262 VLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+L A+ ++ +TK+ +N+T Y+K +LDA
Sbjct: 97 LL-----ANPNQVRPTRFWGVYTKLKIFNMTSYKKVAYLDA 132
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 38.3 bits (85), Expect = 0.002
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Frame = +1
Query: 100 LATNDSYGLGALVLAHSLRRAG-SVYPA------VALITPTVSEAMRDRLRAVFSEVVTV 258
L + + Y GALV A S+R A S P+ VAL+ T+S R L A +V +
Sbjct: 321 LHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDETISARHRGALEAAGWKVRAI 380
Query: 259 DVLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+ + AA A + ++K W+LT+Y++ VFLDA
Sbjct: 381 RRVRNPRAAADAYNEW-----NYSKFWLWSLTEYDRVVFLDA 417
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.3 bits (65), Expect = 0.55
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 40 LELSHETTPGFIMSNR-AWVTLATNDSYGLGALVLAHSLRRAGSV-YPAVALITPTV-SE 210
+ L+H TTP + NR + +A+N LGA H LR A +V P ++L T SE
Sbjct: 299 VHLTHLTTPESVFHNRLGFAAVASNP---LGAAASGHLLRAASAVASPLLSLFASTFRSE 355
Query: 211 AMR-DRL 228
A R D+L
Sbjct: 356 ANRLDKL 362
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 28.7 bits (61), Expect = 1.7
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +1
Query: 136 VLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSE----VVTVDVLDSRDAAHLALLQ 303
V+ SL R G+ V + + V D +RA+ E VV V+ + + ++L +
Sbjct: 78 VMMRSLARIGADADRVLIASADVPA---DWVRAMREEDGMRVVLVENMKNPYESNLGGIN 134
Query: 304 RPELGITFTKIHWWNLTQYEKCVFLDA 384
R +T K++ W L YE+ V +D+
Sbjct: 135 R-RFKLTLNKLYAWTLVDYERVVMIDS 160
>06_02_0308 + 14124373-14124706,14124888-14124910
Length = 118
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 130 ALVLAHSLRRAGSVYPAVALITPTVSEA-MRDRLRAVF 240
+LVL L+ G + VA + P +SEA +R R +A+F
Sbjct: 25 SLVLLQQLQLLGVLVVVVAGVAPGISEAQVRSRFKAIF 62
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 169 PSRRGGANGPAPELPSRRSRLWPELP 92
P GG N P PE+P R P++P
Sbjct: 172 PEGGGGDNAPPPEVPPEAPRDLPDIP 197
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +1
Query: 181 VALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDA----AHLALLQRPELGI 321
V+L PT+ ++ D L++ + +D+ +D A+++LLQ+PEL +
Sbjct: 255 VSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSV 305
>08_01_0793 - 7685702-7686955
Length = 417
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 187 VLRQGTPSRRGGANGPAPELPSRRSR-LWPELP 92
+L QG+PS++ N P + PS S+ +P+ P
Sbjct: 11 LLNQGSPSQQSSQNSPPTQFPSTFSQSQFPQSP 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,892
Number of Sequences: 37544
Number of extensions: 190112
Number of successful extensions: 660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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