Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2081
(384 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified vi... 120 4e-28
U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified vi... 120 4e-28
U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified vi... 120 4e-28
Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical pr... 111 2e-25
AL132862-24|CAB60560.1| 173|Caenorhabditis elegans Hypothetical... 40 8e-04
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 28 2.6
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 28 2.6
U27312-4|AAA68248.1| 405|Caenorhabditis elegans Hypothetical pr... 27 4.5
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 27 6.0
>U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform b
protein.
Length = 284
Score = 120 bits (289), Expect = 4e-28
Identities = 56/101 (55%), Positives = 72/101 (71%)
Frame = +1
Query: 82 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 261
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 262 VLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
V +S D+ +L L++RP+LG+TFTK+H W LTQY KCVFLDA
Sbjct: 62 VFNSNDSDNLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDA 102
>U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform c
protein.
Length = 303
Score = 120 bits (289), Expect = 4e-28
Identities = 56/101 (55%), Positives = 72/101 (71%)
Frame = +1
Query: 82 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 261
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 262 VLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
V +S D+ +L L++RP+LG+TFTK+H W LTQY KCVFLDA
Sbjct: 62 VFNSNDSDNLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDA 102
>U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform a
protein.
Length = 429
Score = 120 bits (289), Expect = 4e-28
Identities = 56/101 (55%), Positives = 72/101 (71%)
Frame = +1
Query: 82 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 261
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 262 VLDSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
V +S D+ +L L++RP+LG+TFTK+H W LTQY KCVFLDA
Sbjct: 62 VFNSNDSDNLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDA 102
>Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical
protein T25E12.5 protein.
Length = 300
Score = 111 bits (266), Expect = 2e-25
Identities = 51/99 (51%), Positives = 68/99 (68%)
Frame = +1
Query: 88 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 267
AW+TLATND Y GAL L +SL +G+ LIT +S ++R++L F EV VD+
Sbjct: 4 AWITLATNDRYAQGALTLLNSLHASGTTRRIHCLITNEISNSVREKLVNKFDEVTVVDIF 63
Query: 268 DSRDAAHLALLQRPELGITFTKIHWWNLTQYEKCVFLDA 384
+S D+ +L+L+ RP+LG+TFTK H W LTQY K VFLDA
Sbjct: 64 NSNDSENLSLIGRPDLGVTFTKFHCWRLTQYSKAVFLDA 102
>AL132862-24|CAB60560.1| 173|Caenorhabditis elegans Hypothetical
protein Y73F8A.31 protein.
Length = 173
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 187 LITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGI 321
LIT +S ++R+ L F EV VD +S D+ +L+L+ RP+L +
Sbjct: 35 LITNEISNSVREELENKFDEVNIVDFFNSNDSENLSLIGRPDLAV 79
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 177 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 52
RV RAG A R + +Q +V Q++PC + C ++
Sbjct: 615 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 656
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 177 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 52
RV RAG A R + +Q +V Q++PC + C ++
Sbjct: 552 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 593
>U27312-4|AAA68248.1| 405|Caenorhabditis elegans Hypothetical
protein F26A1.8 protein.
Length = 405
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 67 GFIMSNRAWVTLATNDSYGLGALVLAHSLRRAGSV 171
GF+ + AW +A LG V +L +AGS+
Sbjct: 348 GFLCTKPAWQLIAVGGCIILGGFVFFSALSKAGSI 382
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 219 PHSFTDGRCDECYGRVHRAGA 157
P+ F + C+EC GR HR A
Sbjct: 365 PYFFHNQSCEECSGRYHRQHA 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,051,199
Number of Sequences: 27780
Number of extensions: 144645
Number of successful extensions: 462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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