Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2076
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    23   0.96 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   5.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   9.0  

>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 47  FIVFTALLACTAAAPGLLLHETPVVAAVHTPVIHTVPIVAAKTTVTKSSQVVNHGST 217
           F+VF ALL   ++   L+L E   +        + +  V  K   TK ++ +  G T
Sbjct: 7   FLVFGALLTYVSSVEYLILREIDTILKNDQMTRNYLDCVLDKGKCTKEAEKLKKGIT 63


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 76  HRRCTRPAPPRNP 114
           H++C +PAP  +P
Sbjct: 34  HQKCPKPAPIYSP 46


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 328 PNRPHRSCSCED 363
           PN  H SCS +D
Sbjct: 12  PNIDHNSCSSDD 23


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 241 PCRTRGSCRTR 273
           PCR  GSC  R
Sbjct: 114 PCRNNGSCVDR 124


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 64 CGENNEGFHF 35
          CGE   GFHF
Sbjct: 8  CGEPAAGFHF 17


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +3

Query: 69  WPAPPLHPACSSTKP 113
           W  PP  P+   +KP
Sbjct: 412 WARPPSTPSADGSKP 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,761
Number of Sequences: 336
Number of extensions: 1787
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)