Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2076
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0243 - 16791789-16793306                                         31   0.40 
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940...    28   3.8  
07_03_0072 - 13051145-13052362                                         27   5.0  
09_04_0297 - 16471315-16471485,16471948-16472013,16473466-164736...    27   6.6  
02_01_0173 + 1190846-1191134,1191235-1191557,1191645-1191958,119...    27   6.6  
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841           27   8.7  
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500...    27   8.7  
06_02_0210 - 13039479-13039566,13039674-13039770,13040470-130405...    27   8.7  

>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 59  TALL-ACTAAAPGLLLHETPVVAAVHTPVIHTVPIVAAKTTVTKSSQVVNHGS 214
           T LL AC A APG+ +H      A  T  +HT   + A    T    V++  S
Sbjct: 159 TVLLPACRALAPGVTVHHAACDGASSTHFLHTWAAICAGAAATPPPPVIDRTS 211


>04_04_1570 -
           34492944-34493159,34493668-34493842,34493964-34494068,
           34494454-34494623,34494760-34494830,34494950-34496799,
           34497003-34497052,34497147-34497263
          Length = 917

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 289 GCGMDHVCGMNHG 251
           GC ++H+CG+ HG
Sbjct: 407 GCNVEHICGVEHG 419


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 219 WYIPPLWSMPHPWFMPHTWSMPH 287
           W+  P W M H WF    W+M H
Sbjct: 367 WF--PRWPMNHRWFFLMFWAMNH 387


>09_04_0297 -
           16471315-16471485,16471948-16472013,16473466-16473628,
           16473847-16473956
          Length = 169

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 116 LGFRGGAGRVQRRCRPGV 63
           +GFRGGA  VQ R R G+
Sbjct: 10  IGFRGGADNVQMRMRSGL 27


>02_01_0173 +
           1190846-1191134,1191235-1191557,1191645-1191958,
           1192302-1192461
          Length = 361

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 40  EILHCFHRTPGLHRRCTRPAPPRNPSG 120
           E+L C     GLH  C RP  PR P+G
Sbjct: 46  ELLLCDGCDRGLHIFCLRPILPRVPAG 72


>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
          Length = 348

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 422 QQWECGGAPRRNCERWQRGRSSQLQ 348
           Q+ E  G  R + E W RGR S LQ
Sbjct: 105 QRLEAEGEGRWSVEHWSRGRRSDLQ 129


>07_03_1739 -
           29148685-29149017,29149564-29149726,29149844-29150028,
           29150708-29150977
          Length = 316

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 319 DNWGSDSVDHGCGMDH 272
           DNW S  + H CG DH
Sbjct: 147 DNWKSKQLVHKCGKDH 162


>06_02_0210 -
           13039479-13039566,13039674-13039770,13040470-13040545,
           13041222-13041356
          Length = 131

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 59  TALLACTAAAPGLLLH--ETPVVAAVHTPVIHTVPIVAAKTTVTKSSQ 196
           T+ L  TAA+P LLL    +P+ A+   PV       + KT  T++ Q
Sbjct: 4   TSSLTATAASPPLLLKPAPSPLAASFLRPVSRFSRFQSVKTKATENDQ 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,348
Number of Sequences: 37544
Number of extensions: 248930
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)