Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2075
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              20   8.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 51  TGPPPGSAAAE 19
           TGPPPG   A+
Sbjct: 382 TGPPPGPTPAQ 392



 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 53  TPARHQDPPPPNSAA 9
           TP +   PPPP S++
Sbjct: 337 TPPKPAPPPPPPSSS 351


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 376 IIFIFGYCL 350
           IIFIF +CL
Sbjct: 4   IIFIFAFCL 12


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 373 IFIFGYCLP 347
           IF F YC+P
Sbjct: 215 IFTFSYCIP 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,812
Number of Sequences: 438
Number of extensions: 1559
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)