Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2074
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    28   0.74 
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.7  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   4.0  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   4.0  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   5.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   6.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   6.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   6.9  

>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 58  TTYPYDTRKNVYRDEIKKNTKKNLE*PNFLLC*KVK 165
           T Y     K V+ D +K NTKKNLE    +LC K++
Sbjct: 262 TIYLPKLLKKVFLDVVKPNTKKNLE-TCGILCGKLR 296


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 265 PQLTYHFRAHSTVSHRIGCPQHRRRRCLESQRLPD 369
           P+   HF+ H  + H    P+ RR+  ++   +PD
Sbjct: 148 PEDIEHFQKHDEIFHGDKKPEERRKHFVKYNNIPD 182


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 269 NLRIISEHTR--QCPTV*DAPSTGGGAAWSPSASR 367
           NLRI     R  Q   V D+PS G    WSP +SR
Sbjct: 6   NLRIGKSPNRLIQDLDVFDSPSAGWNDPWSPHSSR 40


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 205 NRLIFNQASWIPDDEVFRACPQLTYHFRAHSTVSHRIGCPQHR 333
           +R + N+  +  D+E  R       HFR  S +   +GC + R
Sbjct: 320 DRHVINREQFFADEEAKRFKDSFRKHFRDISRIMDCVGCDKCR 362


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 22  KPNRQKSQLHWSTTYPYDTRKNVYRDEIKKNTKKNLE*P 138
           K  +QK++L   TTY  D      R  I   + K LE P
Sbjct: 766 KSQKQKTELATFTTYKEDDTTTTTRTSIDSISSKYLESP 804


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +2

Query: 227  QAGSQTTRYFGLALNLRIISEHTRQCPTV*DAPSTGG--GAAWSPSASRTCRPAHTLRKI 400
            Q G       G+A N    +E +     + D+PS     GA  SP+ASR   P      I
Sbjct: 803  QPGKSGIATMGVADNTIRTTERSTFSEIMKDSPSAHASPGAKTSPNASRAPEPTGGTNSI 862

Query: 401  SYRTRSDI 424
            S  T   +
Sbjct: 863  SQDTTQSL 870


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 309 VGHCRVCSEMIRKLRA 262
           VGHC++C +   +LRA
Sbjct: 704 VGHCKLCGKYSNELRA 719


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 228 KLDPRRRGISGLPSTYVSFQSTLDSVPPYR 317
           KLDP    I GL S  +SF+  L   P YR
Sbjct: 464 KLDP----IRGLRSKLISFERFLQKYPEYR 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,674
Number of Sequences: 5004
Number of extensions: 32219
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)