Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2074
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    31   0.42 
03_02_0547 - 9389188-9389476,9389577-9389938                           31   0.55 
10_06_0188 - 11603941-11604528                                         28   2.9  
10_08_0420 - 17788170-17788178,17788239-17789174                       28   3.9  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    28   3.9  
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     27   5.1  
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946...    27   9.0  
03_06_0164 - 32106920-32106991,32107309-32107896                       27   9.0  
03_05_0039 - 20125473-20126222                                         27   9.0  

>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   KTYRAQKAKQTKITASLEHNVSLRHEKKRLSRRNKKKYKEKSR 131
           +T R +K +      + E   S RHEKK+  R+ K K+KEK R
Sbjct: 460 RTERMEKVRDGAPDVAKEDKKSDRHEKKK--RKEKDKHKEKKR 500


>03_02_0547 - 9389188-9389476,9389577-9389938
          Length = 216

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 275 RIISEHTRQCPTV*DAPSTGGGAAWSPSASRTCRPAHTLRKISYRTR 415
           R+ + H    PT+  AP+   G++W+P  +  C   H  R  + R +
Sbjct: 25  RVHARHLPGLPTLAAAPARTNGSSWAPGKTEHCTAQHKRRLQAVRDK 71


>10_06_0188 - 11603941-11604528
          Length = 195

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 259 ACPQLTY-HFRAHSTVSHRIGCPQHRRRRCLESQRLPDLPP 378
           ACP   Y H         R+ CP    RR   +  LP  PP
Sbjct: 18  ACPHCCYVHSYPRHYAGRRLRCPTAACRRAFSAAELPAAPP 58


>10_08_0420 - 17788170-17788178,17788239-17789174
          Length = 314

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 54  EHNVSLRHEKKRLSRRNKKKYKEKSRI 134
           E+NVSLRH +KR  + N K  KE  ++
Sbjct: 136 ENNVSLRHRRKR-EKGNVKNPKESKKV 161


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 326 STG-GGAAWSPSASRTCRPAHTLRKISYRTRS 418
           STG GGAA      R+C P H     SY T S
Sbjct: 230 STGLGGAAIPDGEDRSCVPGHAAAAASYSTAS 261


>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 305 PTV*DAPSTGGGAA-WSPSASRTCRPAH 385
           P V  A   GGGA  W+P  S T RP H
Sbjct: 247 PHVSGARGEGGGAGTWAPRVSGTKRPVH 274


>04_04_0689 -
           27292271-27292709,27293717-27293856,27294572-27294664,
           27295614-27296012,27296258-27296392,27296482-27296835
          Length = 519

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 286 RAHSTVSHRIGCPQHRRRRCLESQRLPDLPP 378
           RA +  +     P+HRRRR    +RLP  PP
Sbjct: 57  RAAAAAAEASRGPKHRRRRRPGGRRLPPPPP 87


>03_06_0164 - 32106920-32106991,32107309-32107896
          Length = 219

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 241 DDEVFRACPQLTYHFRAHSTVSHRIGCPQHRRRRCLE 351
           +DE++  C +L + F  +    HR+    H+ RR  E
Sbjct: 117 EDELYMVCLRLDHDFTIYDMTVHRMDFFSHQWRRVYE 153


>03_05_0039 - 20125473-20126222
          Length = 249

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 321 ASYTVGHC-RVCSEMIRKLRASPKYLVVWDPACLIKY 214
           A  T   C R    + R++  S K  VVW  AC+++Y
Sbjct: 90  ARATCAECIRAAGALARRVCPSKKDAVVWLDACMLRY 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,265
Number of Sequences: 37544
Number of extensions: 208108
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)