Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2074
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical
           protein R10E4.3 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 42  TASLEHNVSLRHEKKRLSRRNKKKYKEK-SRIT*LFIVLKSESVPVL 179
           TA +E+ V L+  K+   ++ K+K KE+   +  L  V  ++ +P+L
Sbjct: 158 TAGIEYLVPLKRSKEEKEKKKKRKTKERMDALDELTRVTSNDRIPLL 204


>Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 169 YRCCDSEIYFIFNRLIFNQASWIPDDEVFRACPQLTYHFRAHSTVSHRIGC-PQHR 333
           Y   D     +FNR   NQ +   +++ +     + YH + H    + + C P H+
Sbjct: 451 YSIIDCTAELLFNRTFLNQTNIKMNEKYYEEMVTVIYH-KDHKNPGYHLNCTPSHQ 505


>Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 169 YRCCDSEIYFIFNRLIFNQASWIPDDEVFRACPQLTYHFRAHSTVSHRIGC-PQHR 333
           Y   D     +FNR   NQ +   +++ +     + YH + H    + + C P H+
Sbjct: 451 YSIIDCTAELLFNRTFLNQTNIKMNEKYYEEMVTVIYH-KDHKNPGYHLNCTPSHQ 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,836,598
Number of Sequences: 27780
Number of extensions: 186650
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)