Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2072
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   3.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   7.2  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.2  
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    24   9.5  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    24   9.5  

>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 178 QLLFTHVSCNMTTHDKCDNYNERLNVLSIM 89
           QLL  HV  +    +KCD  +E LN+L ++
Sbjct: 91  QLLDNHVPSSQDEEEKCDT-DELLNLLDVV 119


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 232 FHLFTMYKAIVYSIIVHFQLLFTHVSCNMTTHD 134
           +H+FT +   ++  I++  +L  +  CN  THD
Sbjct: 687 WHMFTSFVQYIFLSIMYTNVLNVYAFCN--THD 717


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 216 CIKLLFIQSLYIFSYCLLM 160
           CIKLLF  SL + + C  M
Sbjct: 153 CIKLLFKNSLVLLAACYFM 171


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  NIYSATSVLSKKFQIIKCPLHN 94
           NIY   +V  +K +I+K P H+
Sbjct: 203 NIYPLQNVFVRKVKILKAPKHD 224


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 234 RYYSTIIKTQRLTLKILRHYNEFVPSIFDNIL*LD*YYGMSEANGS*PLAL 386
           R  S +IK+Q++      H N+FV    D+I+ L   YG+ +     P AL
Sbjct: 133 RAVSHLIKSQKMLTDT--HQNDFVCLSCDSIVGLPPIYGLDKFRLDNPSAL 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,610
Number of Sequences: 5004
Number of extensions: 25356
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)