Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2072
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    29   0.88 
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    27   3.6  
Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    26   8.2  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    26   8.2  

>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 256 FIIVL*YLFHLFTMYKAIVYSIIVHFQLL-FTHVSCNMTTHDKCDNYNERLNVLSI 92
           FI+V   LFH+   + +  Y ++V+FQL+ F   SC    H     YN  L   S+
Sbjct: 30  FILVYLTLFHIKRQFGSYKY-LLVNFQLVGFCFASCEYLFHTFLHLYNASLIYFSL 84


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -1

Query: 343 YQSNYKILSNIEGTNSL*CLKIFKVKRCVFIIVL*YLFHLFTMYKAIVYSIIVHFQLLFT 164
           Y   Y +L++I     L  L IFK++ C F   + +L+ ++  +  I+ S++ +  +   
Sbjct: 18  YSQFYTLLTSIFSVFPLLYLIIFKLRVCTFNDNIKFLYIVY--FTQILISVLNNCVVFAH 75

Query: 163 HVSCNMTTHDKCD 125
           HV        KCD
Sbjct: 76  HVVIPFLAVSKCD 88


>Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical
           protein C33D9.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 210 KLLFIQSLYIFSYCLLM 160
           KL+FI S YIF+YC+LM
Sbjct: 102 KLIFI-STYIFNYCILM 117


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 214  YKAIVYSIIVHFQLLFTHVSCNMTTHDKC 128
            Y  +   +I H + L+T V+C ++ H KC
Sbjct: 1494 YCEVCNQLIWHHEKLYTCVACRISCHKKC 1522


>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 17  TNILNIYSATSVLSKKFQIIKC-PLHN 94
           TNI +IY    VL++KF  I   P+HN
Sbjct: 460 TNISSIYGVNEVLTEKFGPINYGPIHN 486


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 66  NFFERTDVAE*IFNIFV*YLL 4
           N FE +DVA   FN+FV Y L
Sbjct: 80  NIFEESDVATMKFNLFVWYFL 100


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 66  NFFERTDVAE*IFNIFV*YLL 4
           N FE +DVA   FN+FV Y L
Sbjct: 80  NIFEESDVATMKFNLFVWYFL 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,040
Number of Sequences: 27780
Number of extensions: 138283
Number of successful extensions: 260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)