Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2070
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 287 LDENKFTYLIKVISFSSVH 231
           LD+NKF  +IK+ +  S +
Sbjct: 828 LDQNKFKDIIKIKTIGSTY 846


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 107 HLSTHVRGSL 136
           HL TH+RG+L
Sbjct: 128 HLRTHLRGTL 137


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 371 KNNKKNGTNSR 339
           KNNKKN  N +
Sbjct: 435 KNNKKNANNQK 445


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 410 KKYLV*YRPKHFNKNNKKN 354
           K+YLV     H+++NN  N
Sbjct: 234 KEYLVSIMFSHYDRNNNGN 252


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 374 NKNNKKNGTNSRFIGP*CSN 315
           N NN  NG N    G   SN
Sbjct: 246 NNNNNNNGANDNGNGNGASN 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,313
Number of Sequences: 438
Number of extensions: 1489
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)