Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2069
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   4.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.4  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    25   7.2  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   7.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 401 PDAASSARLPPRWTGVRCRSGSSLSPSQPFRQLESIDLSSKTWVSNP 261
           P + SSA LP   +     S SSLS S P        LSS T  S P
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQP 187


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +2

Query: 242 PEGLVLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADI 409
           P   V P+Y P + +      + G  +TD  T P G GP  T   +      PA I
Sbjct: 294 PSITVPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQI 347


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 197 DDHYTQNSHTNLNGDRNRH 141
           DDH +Q+ HT+ N   + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 257 ARVLQESCTVQQMARRSDKLDDHYTQNSHTNLNGDRNRH 141
           A V Q+ C ++ +   +D+    YTQ+   NL+  +N+H
Sbjct: 270 AYVDQDPCHIRVLNANTDQSLILYTQSDVKNLHFGKNKH 308


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 341 PNGTGPLSTEEEDERLKQRPADIDADVR 424
           P+ TG L  EEEDERL     D   DVR
Sbjct: 406 PDLTGHL--EEEDERLNDEYLDKAVDVR 431


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 302 ESIDLSSKTWVSNPVARVLQESCTVQQMARRSDKLDDHYTQNSHTNLNGDR 150
           E+ID   K W +   A++L    +  + +  + K+   +T N+HT  N  R
Sbjct: 377 ETID-RRKLWTNEEEAKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQR 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,949
Number of Sequences: 5004
Number of extensions: 35030
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)