Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2068
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   1.0  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    27   1.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   1.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   1.8  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   2.3  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   3.1  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    24   9.4  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
 Frame = +3

Query: 108  QSNFMVSILNCKIKSRTH*SRYFAVFLIKMRLL---YYYELLLFCKIWTDCRGLYQRIPS 278
            +++FM S +N  I+S      Y  + L+ M  L   YY E  L   +  + R L      
Sbjct: 842  KNSFMTSRVNWAIQSSA--VDYLHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDK 899

Query: 279  AKSTYLFR----WTRSFFCRAM 332
             +  +  +    WTR+FFC+ +
Sbjct: 900  YRVAFALQVANLWTRAFFCQRL 921


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 217 NFYFFAKFGPIAGVYIRGSLRQNLPTYLD 303
           N +FF KF      Y    +R+N+ TY D
Sbjct: 368 NIHFFMKFAEFGDPYNWSVIRKNMHTYAD 396


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 186 LIKMRLLYYYELLLFCKIWTDCRGLYQRIPSAKSTYLFRWTR 311
           ++ MRLL +  +L    +WTD + +Y  +       LF + R
Sbjct: 54  ILMMRLLRHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIR 95


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 247 IAGVYIRGSLRQNLPTYLDG--PDRFSVVPCH 336
           I  VYI G+  QNLP Y DG  P  F+++  H
Sbjct: 122 IKAVYIAGTPFQNLPWYPDGYSPLDFTLLDKH 153


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 169 LDQWVRDFILQFKIDTMKFDC*FRIIIKFALEVMLR*FLLTV-SYF 35
           L++W+++ + ++ ID ++FD      I+F L +     + T+  YF
Sbjct: 214 LEKWIKNVVQEYDIDGIRFDAIKHAPIEFWLRMSKAADIFTIGEYF 259


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 LRCDCYIIMNFYFFAKFGPIAGVYIRGSL 276
           LR D   +MN+ FF  F    GVY  G +
Sbjct: 226 LRIDAVKMMNYTFFPDFVDATGVYSVGEV 254


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 168 RYFAVFLIKMRLLYYYELLLFCKIWTDCRGLYQRIPSAKSTYLFRWT 308
           R  A+F++ + + Y Y  +     +T  +G  +R    K T++  WT
Sbjct: 13  RILALFVLCVPIYYLYTTVQRPPGYTKLKGSTRRKALIKKTFIESWT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,873
Number of Sequences: 5004
Number of extensions: 30712
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)