Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2068
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    27   5.1  
05_05_0097 - 22356209-22357227,22357314-22357445,22357537-223577...    27   5.1  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    27   6.7  

>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 ILNCKIKSRTH*SRYFAVFLIKMRLLYYYELLLFCKI 239
           I+ CKI      +  F  FL++  +L +Y   LFC I
Sbjct: 475 IIRCKIAFWKKANLIFLFFLLRKLILPFYSFTLFCII 511


>05_05_0097 -
           22356209-22357227,22357314-22357445,22357537-22357781,
           22357870-22358015
          Length = 513

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 368 TNFSNEIITYSWHGTTEKRSG 306
           TN  N  +T+ WHG  + RSG
Sbjct: 38  TNNINNNVTFHWHGIRQVRSG 58


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 ILNCKIKSRTH*SRYFAVFLIKMRLLYYYELLLFCKI 239
           I+ CKI      +  F  FL++  +L +Y   LFC I
Sbjct: 490 IIKCKIVFWKKANLIFLFFLLRKLILPFYSFTLFCII 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,309
Number of Sequences: 37544
Number of extensions: 171980
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)