Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2068
         (384 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   3.8  
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    22   8.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            22   8.9  

>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 218  TFTFLQNLDRLQGFISEDPFGKIYL 292
            T  F+   DRL GF+  D F  ++L
Sbjct: 2564 TTVFVYADDRLVGFVRNDQFYSVWL 2588



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 280 QNLPTYLDGPDRFSVVPCHEYVIISLEKFV 369
           Q +PTYL  P   S+   H++++   E+ V
Sbjct: 801 QAIPTYLKIPKDSSIRAGHDFLLAIQEQCV 830


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 237 IWTDCRGLYQRIPSAKSTYL 296
           +WT C+ +++RI  ++S  L
Sbjct: 292 LWTRCKFMWERIDRSESRNL 311


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 280 QNLPTYLDGPDRFSVVPCHEYVIISLEKFV 369
           Q +PTYL  P   S+   H++++   E+ V
Sbjct: 800 QAIPTYLKIPKDSSIRAGHDFLLAIQEQCV 829



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 242  DRLQGFISEDPFGKIYL 292
            DRL GF+  D F  ++L
Sbjct: 2571 DRLVGFVRNDQFYSVWL 2587


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,259
Number of Sequences: 2352
Number of extensions: 7101
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29501847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)