Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2068
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical p...    27   6.0  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   6.0  
Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical
           protein T09E11.12 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 225 LFCKIWTDCRGLYQRIPSAKSTYLFRWTRSFFCRAMP 335
           LFC + T  R + +R+PS  ST+L R     F    P
Sbjct: 80  LFCFVETSERYMDERVPSIASTWLRRCDNGRFFSKTP 116


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 74  SDATVIFINCVLFCCSFRFLCVHF 3
           S  T+IF+  + F  SF FLC+ F
Sbjct: 189 SQNTIIFLVTLFFAASFGFLCLCF 212


>Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical
           protein F47B10.8 protein.
          Length = 237

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 351 NNNILMAWHDRKTIWSI*ISR*ILPKGSSDINPCNRSKFCKKVKV 217
           N N +M    R+T+ S+  +   +P  S   N C+  K C+ V V
Sbjct: 30  NGNGIMKTPQRETVVSLGFTEDPIPPNSYCCNSCHIQKACRAVAV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,865
Number of Sequences: 27780
Number of extensions: 173054
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)