Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2067
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 2e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 3e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 55 7e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 4e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 32 0.044
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.94
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.2
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc... 26 3.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 5.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.8
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.8
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 130 bits (313), Expect = 2e-31
Identities = 59/71 (83%), Positives = 64/71 (90%)
Frame = -2
Query: 506 MYPEIPTGMQKKITALPPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 327
MYP I MQK+I AL PS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 326 SGPSIVHRKCF 294
SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.3 bits (137), Expect = 3e-10
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Frame = -2
Query: 482 MQKKITALPPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP-- 318
+Q +++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G
Sbjct: 366 LQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDR 424
Query: 317 -SIVHRKC 297
+++ ++C
Sbjct: 425 LALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 54.8 bits (126), Expect = 7e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Frame = -2
Query: 473 KITALPPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 294
++ A+ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 321 ELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 4e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -2
Query: 407 SVWIGGSILASLSTFQQMWISKQEYDESG 321
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 42.3 bits (95), Expect = 4e-05
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Frame = -2
Query: 506 MYPEIPTGMQKKITAL--------PPSTM---KIKIIAPPERKYSVWIGGSILAS-LSTF 363
MY +P+ ++K+I L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 362 QQMWISKQEYDESG 321
MW+SK E++E G
Sbjct: 365 DHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 440 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 303
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 32.3 bits (70), Expect = 0.044
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = -2
Query: 500 PEIPTGMQKKITALPPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 321
P + T +++++T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 320 PSIV 309
P +
Sbjct: 708 PEYI 711
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.94
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 401 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -2
Query: 503 YPEIPTGMQKKITALPPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEY 333
+P ++++I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 542 FPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDW 601
Query: 332 DESGPSIVHRK 300
G ++ K
Sbjct: 602 KMLGSRVLQYK 612
>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 418 SGGAMILIFIVDGGRA--VIFFCIPVGISGYMG 510
+GGAM +FI+ + +IFF P+G G+ G
Sbjct: 84 AGGAMGTMFILHASFSEYLIFFGTPIGTEGHSG 116
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 409 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 314
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 512 PPMYPEIPTGMQKKITALPPSTMKIKIIAPPERKYSVWIG 393
P P IP+ +++ PP T P KYS+ G
Sbjct: 301 PSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSG 340
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 342 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 428
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 374 LSTFQQMWISKQEYDESGPSIV 309
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 420 WRSNDLNLHCRWGESCD 470
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 8.8
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 406 PYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 239
P SVD S+PPS P S + S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,659
Number of Sequences: 5004
Number of extensions: 35672
Number of successful extensions: 104
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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