Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2066
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 1.7
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 2.2
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 3.0
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 3.0
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 3.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 3.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 3.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 3.9
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 24 5.2
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 24 6.8
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 23 9.0
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 23 9.0
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 23 9.0
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 23 9.0
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +2
Query: 47 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 160
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 121 HLQQYPPIHRWYLLSLHSSLQC 186
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 135 PTHTQMVPAVPTQLSAVRS 191
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 257 DSGSSWFRSWYW 292
D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 86 VCHLLQLCTGATT 124
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 86 VCHLLQLCTGATT 124
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 24.6 bits (51), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 86 VCHLLQLCTGATT 124
+CHLL+ CT TT
Sbjct: 218 ICHLLKQCTSVTT 230
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 86 VCHLLQLCTGATT 124
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 278 RSWYWNSLRLPHHRL 322
+ WY+NS RL HRL
Sbjct: 79 QDWYYNSTRLLVHRL 93
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 74 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSA 187
P + +CH L T +T + P + TC L SA
Sbjct: 15 PSNVLCHNLHTGTLVSTFRQSSPAKNATCTTLNHLLSA 52
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 155 YHLCMGGYCCKWSH 114
Y + GY C WSH
Sbjct: 133 YEISQSGYYCIWSH 146
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 146 CMGGYCCKWSHQCR 105
C GG+CCK CR
Sbjct: 492 CCGGHCCK-EESCR 504
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 120 VAPVQSCRRWQTWLQG-RSVWRQTAFCFYKVRRATTK 13
V P + W+TW+ G +S + A F KV+ K
Sbjct: 128 VRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAK 164
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 152 HLCMGGYCCKWSHQCRVAEDG 90
+L +GGY CK H +A G
Sbjct: 132 YLVLGGYDCKGPHLFTIAAHG 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,409
Number of Sequences: 5004
Number of extensions: 27697
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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