Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2066
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.13
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 0.38
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 0.89
07_03_1191 + 24690936-24691029,24691184-24691377 29 0.89
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 0.89
02_01_0775 + 5775949-5777385 29 0.89
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 1.5
08_02_1172 + 24898290-24899141,24900864-24901328 28 2.0
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 27 2.7
04_03_1022 - 21778315-21779007 27 2.7
03_02_0662 - 10250235-10250433,10250692-10253105 27 2.7
12_01_0686 - 5855216-5858263 27 3.6
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 27 3.6
04_04_1030 - 30249160-30250403,30250787-30251666 27 3.6
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 3.6
01_05_0490 + 22672241-22674679 27 3.6
03_05_0677 + 26663880-26664581 27 4.7
11_01_0710 - 5830475-5830595,5831498-5834124 26 6.2
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 26 6.2
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 26 6.2
08_02_0478 + 17621678-17623768 26 8.3
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 26 8.3
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 26 8.3
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 26 8.3
03_01_0080 - 640806-641146,642484-642700,642795-642952,644057-64... 26 8.3
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 26 8.3
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641... 26 8.3
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 53 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 181
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 53 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 154
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 0.89
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 230 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 60
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 163
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 0.89
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 55 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 228
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 229 LPNS 240
+PN+
Sbjct: 239 MPNA 242
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -3
Query: 140 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPR 3
GG +W Q RV G GC G + CGA P+
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQ 392
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 207 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 61
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 55 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 231
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 232 P 234
P
Sbjct: 100 P 100
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -3
Query: 296 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGY 132
C N ++G Y C C+ S N + G +N+ EGP SR + GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319
Query: 131 CCK 123
CK
Sbjct: 320 KCK 322
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 19 CRAPHLIKTKCCLPPD*SPLQPGL--PSSATLHWCDHLQQYPPIH 147
C + HL+ PP + P L PS A W DH Y P H
Sbjct: 29 CSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHPPNYHPPH 73
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 224 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCK 123
V ++ D GP+ + L +DS++H + G CC+
Sbjct: 814 VAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQ 847
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 112 WCDHLQQYPPIHRWYLLSL-HSSLQ---CGPSRPHRSLRTLTLLPNSL 243
WCDH+ +Y P + +LSL + SL C RSL T+ L N L
Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLL 278
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 326 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 231
G D +E+C+ GT+ + RC+ TN FG
Sbjct: 684 GFRDRRRSENCTMQQDGTNKRNSRCSETN-FG 714
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 27.1 bits (57), Expect = 3.6
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Frame = -3
Query: 329 PGIADDEGAEDCSNT--SSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 156
P A G+ CS + SY R + G+ VL ++G +C+E R +
Sbjct: 200 PTSAVGSGSTRCSKAFIAEQDSYVFSRHDLYKDLGNLPMVLD--WYIQGGNCKEASRSRQ 257
Query: 155 YHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRC 30
Y CK + C EDG G R + SGG +I C
Sbjct: 258 ------TYMCKENSYCYEVEDG-AGYRCNCSGGYTGNPYIGC 292
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 109 HWCDHLQQYPPIHRWYLLS 165
HWC Q P IHR++L S
Sbjct: 516 HWCQLEQSAPTIHRFFLPS 534
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 196 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMP 327
+P + + T+T P L R+W + E+VLEQ S + MP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMP 338
>03_05_0677 + 26663880-26664581
Length = 233
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 88 LPSSATLHWCDHLQQYPPIHRWYLLSLHS 174
LP + C HL +P I+RW + HS
Sbjct: 30 LPQEPIVTLCGHLFCWPCIYRWLHIHAHS 58
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +1
Query: 19 CRAPHLIKTKCCLPPD*SPLQPGLPS--SATLHWCDHLQQYPPI 144
C +L+ C LP L LP+ T+HWC L P I
Sbjct: 669 CSVTNLVVKFCTLPLSQWSLLHHLPALRHLTIHWCADLTSSPEI 712
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 170 CRDSRYHLCMGGYCCKWSHQ-CRVA 99
CRD +Y C CC H C++A
Sbjct: 375 CRDGKYSHCHDSECCSSYHDTCKLA 399
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 170 CRDSRYHLCMGGYCCKW 120
CRD Y GG CKW
Sbjct: 241 CRDRYYRALAGGQYCKW 257
>08_02_0478 + 17621678-17623768
Length = 696
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 204 MWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQS 103
MWS R +QR + + + V GW ++V V S
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHS 652
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 89 CHLLQLCTGATTCSSTHPYTDGTC 160
C +L + T T C S HP D C
Sbjct: 238 CFILWMSTIRTMCLSNHPGLDNVC 261
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 189 TALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQG 73
T+LQR + + GW+ V P Q RRW +G
Sbjct: 25 TSLQRGEIQEATSQLVGWLGQPRVRPNQCQRRWMQGFEG 63
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = -3
Query: 308 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYC 129
G DCS+ S CR +G ++ + PHC E ++ +C C
Sbjct: 202 GKTDCSSCHSSYGIL-CRACLKVRYGEDMDEVRKNKNWMCPHCIEEKGTKKFWICNSSIC 260
Query: 128 CK 123
K
Sbjct: 261 LK 262
>03_01_0080 -
640806-641146,642484-642700,642795-642952,644057-645062
Length = 573
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 242 WCWCSDSGSSWFRSWYWNSL 301
WCWCSD S +W L
Sbjct: 157 WCWCSDYALSHQGRLWWVDL 176
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 113 QCRVAEDGRPGCRGDQSGGR 54
QC V E PG RG GGR
Sbjct: 385 QCFVEEKRTPGSRGSSRGGR 404
>02_02_0447 +
10363077-10363245,10363419-10363519,10363947-10364140,
10364223-10364634
Length = 291
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 299 DCSNTSSGTSYSHCRCTSTNEFGSRVNVLSD 207
+CS TS G + +C ST S V LSD
Sbjct: 224 ECSTTSGGGNSCAAKCASTYNSKSSVCQLSD 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,095
Number of Sequences: 37544
Number of extensions: 234073
Number of successful extensions: 863
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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