Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2066
(331 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 0.41
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.2
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 2.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 2.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 6.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 20 8.9
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 0.41
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 63 WRQTAFCFYKVRRATTKN 10
W Q FC+++ AT KN
Sbjct: 533 WFQNTFCYFRRNAATWKN 550
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 241 MNLAAESMSLVTDVV 197
+NL AESM +D V
Sbjct: 240 LNLVAESMPTTSDAV 254
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 241 MNLAAESMSLVTDVV 197
+NL AESM +D V
Sbjct: 240 LNLVAESMPTTSDAV 254
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 241 MNLAAESMSLVTDVV 197
+NL AESM +D V
Sbjct: 240 LNLVAESMPTTSDAV 254
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 10 VLCCRAPHLI 39
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 241 MNLAAESMSLVTDVV 197
+NL AESM +D V
Sbjct: 308 LNLVAESMPTTSDAV 322
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.4 bits (43), Expect = 2.9
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 157 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 240
+L ++ L C + +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 2.9
Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
Frame = +1
Query: 127 QQYP-PIHRWY 156
Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 6.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 163 TAGTICVWVGTAASGRTSAE 104
+AGT C W+ + SA+
Sbjct: 26 SAGTSCKWLSEGGNDTRSAD 45
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.8 bits (39), Expect = 8.9
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +2
Query: 251 CSDSGSSW 274
C+DSGS W
Sbjct: 318 CADSGSIW 325
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,268
Number of Sequences: 438
Number of extensions: 2082
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7342137
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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