Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2064
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   1.7  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   6.8  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   6.8  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.8  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 415 NAGRNTCYHAETLRTASVRPSTTSPVIR 498
           N G  TC HA+ ++ A+   +TT+PV +
Sbjct: 83  NTGSRTCRHADAVK-AAAEAATTTPVTK 109


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 478 YSAERSLCVTSRRGNTCFGLRSGRLQHELFTADLQQPVQLSVTFGNRHSGAL 323
           YSA R LC  ++   T     S +   EL  + LQQ V+++  + ++   AL
Sbjct: 250 YSAARRLCSINKDALTHRSHESLQQHIELLESTLQQAVEVARYWTDKRDSAL 301


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 363 CTGCCRSAVKSSCCSRPERRPKHVLPRRDVTHSERSAEYNLT 488
           C  C   A + +   R  R   HV+   D+T  +R  E+ LT
Sbjct: 233 CGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLT 274


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 354 TDSCTGCCRSAVKSSCCSRPERRPKHVLPRRDV-TH-SERSA 473
           T S T    S+  +S CS P    + +LPR +V TH  +RSA
Sbjct: 72  TSSTTDLDSSSASNSSCSIPSSISEKLLPRDNVKTHCPKRSA 113


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 457 CVTSRRGNTCFGLRSGRLQHELFTADLQQPVQLSVTFGNRHSGA 326
           C+T+ +   CFG        ++  A +Q     S +F +  +GA
Sbjct: 183 CITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGA 226


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 406 LQHELFTADLQQPVQLSVTFGNRH 335
           L+HEL +A LQ+ +   + + NRH
Sbjct: 369 LRHELLSAGLQKAIDSLLKWRNRH 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,707
Number of Sequences: 5004
Number of extensions: 31252
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)