Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2064
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26800| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3) 31 0.75
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.00
SB_12783| Best HMM Match : Pep_M12B_propep (HMM E-Value=6.3e-12) 30 1.00
SB_34568| Best HMM Match : Ribosomal_L41 (HMM E-Value=2.3) 29 1.7
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 29 2.3
SB_26784| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22) 28 4.0
SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17) 28 5.3
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6) 27 7.0
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 27 7.0
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_18224| Best HMM Match : Maf (HMM E-Value=6.8) 27 7.0
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.3
SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3) 27 9.3
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.3
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_26800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 485 EVVLGRTLAVRNVSAW*HVFRPAFWSAAARTLHRRP 378
+VV G+TLAV +++A H+ A W R+ HR P
Sbjct: 14 DVVTGKTLAVPSLNALQHIPHFASWRTYPRSPHRSP 49
>SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3)
Length = 382
Score = 30.7 bits (66), Expect = 0.75
Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Frame = -1
Query: 478 YSAERSLCVTSRRGNTCFGLRSGRLQHELFT-ADLQQPVQLSVTF-GNRHS--GALFMKH 311
+S R C R +R R Q + + A L + + S +H+ GA +
Sbjct: 98 FSTRRGACAVVRSSLKMIDIRRVRRQRNMRSCAKLTKDDRYSTRMPAEQHAQLGACAVVR 157
Query: 310 ASRKKLTFLIIRRTNSFVF---------F*LEIPTEESQ---VMSFLRVSAMSRSEQQGL 167
+S K + +RR S F P EE V S L++ + R +Q
Sbjct: 158 SSLKTIDIRRVRRQRSMRSCAKVAKDDRFSTRTPAEEGACAVVRSSLKMIDIRRVRRQMS 217
Query: 166 SRRCPGAGADDREEQRQRGPEAARHGPCVAASCASLWVAVRR 41
R C DDR R + E A+ G C + + +RR
Sbjct: 218 MRSCAKLAKDDRYSTRTQAEEHAQLGACAVVRSSLKMIDIRR 259
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 30.3 bits (65), Expect = 1.00
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 305 GRVLHEEGSAVTVTECDGQLYGLLQVGGEEFVLQPT 412
G V+ E GSAV T DG+ G +Q E F ++P+
Sbjct: 100 GEVVGEPGSAVYGTMEDGKFQGKIQSNTESFYVEPS 135
>SB_12783| Best HMM Match : Pep_M12B_propep (HMM E-Value=6.3e-12)
Length = 457
Score = 30.3 bits (65), Expect = 1.00
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 296 FFTGRVLHEEGSAVTVTECDGQLYGLLQVGGEEFVLQPTRTQAETRVTTPRR 451
F+TG + + S+ ++ C G L G GG+E+ ++P + PRR
Sbjct: 159 FYTGSIQGDSLSSAILSVCHG-LRGTFFTGGQEYFIEPREQERLVSRQHPRR 209
>SB_34568| Best HMM Match : Ribosomal_L41 (HMM E-Value=2.3)
Length = 221
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = -1
Query: 238 PTEESQ---VMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASC 68
P EE V S L+ + R +Q R C DDR R E A+ G C
Sbjct: 78 PAEEGACAVVRSSLKTIDIRRVRRQRSMRSCAKLTKDDRYSTRTPAEEHAQLGACAVVRS 137
Query: 67 ASLWVAVRRAAL 32
+ + +RR L
Sbjct: 138 SLKMIDIRRVRL 149
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -1
Query: 220 VMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASLWVAVRR 41
V S L+ + R +Q R C DDR R E A+ G C + + +RR
Sbjct: 338 VRSSLKTIDIRRVRRQRSMRSCAKVAKDDRYSTRTPAEEYAQLGACAVVRSSLKMIDIRR 397
>SB_26784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 9 GRHVRRCVSAARRTATHREAQLAATHGPCRA 101
G +R AA+RTATHR+ A T+G C++
Sbjct: 61 GSQLREMWRAAKRTATHRD---AVTNGDCQS 88
>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
Length = 1151
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 205 RVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASLW 56
+VS RS+ G+ CP A+ RE +QR + + VA + +++W
Sbjct: 273 KVSYEVRSDCSGIPSSCPAEKAETRELCKQRYQISKQGNYAVAGTRSAVW 322
>SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 159 RRDSPCCSLRDIADTRKKLITCDSSVGISS*KKTKLFVRLI 281
RR++ CC + I D + I D GIS+ + VR I
Sbjct: 339 RRNASCCICKQIYDKHRVQIRTDRKRGISNHVSPRALVRFI 379
>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
Length = 333
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 417 RRPKHVLPRRDVTHSERSAEYNL 485
++P+ VLP R + HS S+ YN+
Sbjct: 252 QQPQSVLPSRYINHSVHSSRYNI 274
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 339 RLPNVTDSCTGCCRSAVKSSCCSRPERRPKHVLPRRDVTHSERSAEYNLTGDTVID 506
RLP + S G +V+ + P+ P RRDVT R +Y+L+G+ +++
Sbjct: 367 RLPGTSASFEGYNPPSVRDT--HLPQMGPMAGRTRRDVTPPARLVDYHLSGNGLLN 420
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 339 RLPNVTDSCTGCCRSAVKSSCCSRPERRPKHVLPRRDVTHSERSAEYNLTGDTVID 506
RLP + S G +V+ + P+ P RRDVT R +Y+L+G+ +++
Sbjct: 713 RLPGTSASFEGYNPPSVRDT--HLPQMGPMAGRTRRDVTPPARLVDYHLSGNGLLN 766
>SB_18224| Best HMM Match : Maf (HMM E-Value=6.8)
Length = 603
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 162 GGVQAPAPTTARSRDSAAQRQHGMVRASPRAAPLCGSRCGALRSRIYAHGGR 7
GG T R+R R+HG +R + +A S GA ++ YA G R
Sbjct: 458 GGTAKCELRTRRTRTPNHTREHGKMRVTHKANAHTQSHKGARQNVSYAQGER 509
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 93 CRAASGPRCLCSSRSSAPAPGHRRDSPCCSLRD 191
C A G +C C + P G SP C+ D
Sbjct: 785 CHYAPGKQCWCVDENGNPISGTMAKSPNCTTSD 817
>SB_31687| Best HMM Match : DUF420 (HMM E-Value=6.3)
Length = 349
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 392 EFV-LQPTRTQAETRVTTPRRYAQRAFGR 475
+FV LQPT +ETR TT R RAF R
Sbjct: 22 QFVKLQPTHFVSETRETTTTRTGIRAFYR 50
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 351 VTDSCTGCCRSAVKSSCCSRPERRPKHVLPRRDVTHSERSA 473
+T + T C K C R RP H+ V H++ A
Sbjct: 409 ITHNRTHCKERPHKCEQCGRSSHRPSHLTSHISVVHNKEKA 449
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 514 RSRSMTVSPVRLYS-----AERSLCVTSRRGNTCFGLRSGRLQHELFTADLQQPV 365
R+R + V PV YS E CVT R N G+++GRL+ +A + V
Sbjct: 4034 RARYIRVHPVTWYSWASMRVEFYGCVTGPRCNRPLGMQNGRLRKTQISASSEYDV 4088
>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 368 RTAVRHIR*PSQRSPLHEARVP*KTDIPYNK 276
R+ +HI PS R PL P T++P NK
Sbjct: 64 RSITKHISSPSSREPLRWGAYP-MTELPLNK 93
>SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 476 LGRTLAVRNVSAW*HVFRP 420
LG LA NV AW HVF P
Sbjct: 388 LGGYLAALNVGAWIHVFSP 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,271
Number of Sequences: 59808
Number of extensions: 307211
Number of successful extensions: 938
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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