Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2064
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    27   8.0  

>Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical
           protein F35E12.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 239 DLKLK-ENKAIRSPYYKECQFFTGRVLHEEGSAVTVT-ECDGQLYGLLQVGGEEFVLQPT 412
           D+ +K +N  I SP  KE ++   + L  E  +VT         + L+ +   E V++PT
Sbjct: 81  DVHIKFDNFYIASPAVKEVEYAVNQTLAYEVVSVTGNLTFSPPTHSLIVMSIYEQVIKPT 140

Query: 413 RTQAETRVTTPRRYAQRAFGRVQPHR*YGHRP 508
            T   T + + + Y  +A    Q    YG  P
Sbjct: 141 GTYFNTTLESNKFYTVKALENDQVGLKYGSLP 172


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 418 RSGRLQHELFTADLQQPVQLSVTFGNRHS 332
           R  R Q+E FT+ L   +Q  +T+G +H+
Sbjct: 317 RQLRKQNEYFTSQLHTEMQKQITYGEKHA 345


>AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical
           protein F28H6.6 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 33  SAARRTATHREAQLAATHGPCRAASGPRCLCSSRSSAPAPGHRRDSP 173
           S AR T T        +   C A +   C  S+R  + A G R+D P
Sbjct: 12  STARTTVTKSTGNFRRSARHCSAPTLTYCPSSTRKKSSAAGTRKDDP 58


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 290 CQFFTGRVLHEEGSAVTVTECDGQLYGLLQVGGEEFVL 403
           CQ       HE+GSA +    + +LYG+ + G    V+
Sbjct: 64  CQILEVETYHEDGSATSYDRTNVKLYGVTKSGNSICVI 101


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 420  RPKHVLPRRDVTHSERSAEYNLTGD 494
            RPK +   ++V H  R  ++ LTGD
Sbjct: 4368 RPKELKNTKEVRHETREQQFRLTGD 4392


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -1

Query: 454 VTSRRGNTCFG--LRSGRLQHELFTADLQQPVQLSVTFGNRHSGALFMKHASRKKLTFLI 281
           +  R    C G  +RS       F + +     LS+T G+     L++ H +       I
Sbjct: 69  MNGRAERICSGDFMRSSLEHFRQFLSSVHVCSSLSITTGSSSLNTLYLHHITEILRKREI 128

Query: 280 IRRTNSFVFF*LEIPTEESQVMSFL 206
           + + N FV   L +P++   V S L
Sbjct: 129 LLKVNEFV---LTVPSKNGHVASIL 150


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 420  RPKHVLPRRDVTHSERSAEYNLTGD 494
            RPK +   ++V H  R  ++ LTGD
Sbjct: 4368 RPKELKNTKEVRHETREQQFRLTGD 4392


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 436 YHAETLRTASVRPSTTSPVIRSST 507
           +  E+  T+S  PST+SPV  SST
Sbjct: 558 FRTESPSTSSTAPSTSSPVTASST 581


>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 217 MSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASL 59
           MS L +SA + S  +   + C G G   ++    R  E + H  C+  SC  L
Sbjct: 1   MSLLLISATTSSTTE--DKLCSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,814
Number of Sequences: 27780
Number of extensions: 204529
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)