Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2060
         (389 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5ADN3 Cluster: Putative uncharacterized protein; n=1; ...    34   0.85 
UniRef50_Q75F87 Cluster: AAL171Wp; n=1; Eremothecium gossypii|Re...    33   2.6  
UniRef50_UPI0000DB70F4 Cluster: PREDICTED: similar to scribbler ...    32   4.5  
UniRef50_UPI0000619033 Cluster: UPI0000619033 related cluster; n...    32   4.5  
UniRef50_A7FTJ8 Cluster: Helicase, UvrD/REP/exonuclease family p...    32   4.5  
UniRef50_Q4U8I4 Cluster: Putative uncharacterized protein; n=2; ...    32   4.5  
UniRef50_A5L927 Cluster: Transporter, truncation; n=11; Streptoc...    31   6.0  

>UniRef50_Q5ADN3 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 100

 Score = 34.3 bits (75), Expect = 0.85
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +1

Query: 142 LIQLYLCVFKNRTVHIIFFFINTGIHRSLF 231
           LI +YLC+F   ++HI+ F+IN+ I+ S F
Sbjct: 46  LIYIYLCIF---SIHIVSFYINSSIYNSYF 72


>UniRef50_Q75F87 Cluster: AAL171Wp; n=1; Eremothecium gossypii|Rep:
           AAL171Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 991

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 22  LENRNKIKNAYAVAYIKLKKKCTLIVASDISSWNLDSRAF 141
           L+  +KI+  YAV  +K+++K   +V   IS WN+ +  F
Sbjct: 751 LDRMDKIQQLYAVVQLKVEEKDVNLVVKCISKWNMKTLKF 790


>UniRef50_UPI0000DB70F4 Cluster: PREDICTED: similar to scribbler
            CG5580-PA, isoform A; n=1; Apis mellifera|Rep: PREDICTED:
            similar to scribbler CG5580-PA, isoform A - Apis
            mellifera
          Length = 1927

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 380  PRG*QADAKPSRRRIPPPLSCLQTRNPSRYSSHTDQ 273
            PR   +   P+   IPPPL+  Q   PS+ SSH  Q
Sbjct: 1189 PRSSVSSPHPAAANIPPPLNIPQPPQPSQLSSHHQQ 1224


>UniRef50_UPI0000619033 Cluster: UPI0000619033 related cluster; n=1;
           Bos taurus|Rep: UPI0000619033 UniRef100 entry - Bos
           Taurus
          Length = 602

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 383 PPRG*QADAKPSRRRIPPPLSCLQTRNPSRY 291
           PPR  ++   P RRR P P  C ++ +P RY
Sbjct: 374 PPRRHRSSTPPPRRRTPSPPPCRRSPSPRRY 404


>UniRef50_A7FTJ8 Cluster: Helicase, UvrD/REP/exonuclease family
           protein; n=4; Clostridium botulinum|Rep: Helicase,
           UvrD/REP/exonuclease family protein - Clostridium
           botulinum (strain ATCC 19397 / Type A)
          Length = 855

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1   PVRIIRRLENRNKIKNAYAVAYIKLKK-KCTLIVASDISSWNLDSRAFLIQL 153
           P  II  + N+ KIK  Y   YIK+   +   ++A +I +  + SR  LI+L
Sbjct: 698 PKDIIGEIVNKTKIKEIYKDQYIKINNLREFFVIAKEIENKEISSRDNLIEL 749


>UniRef50_Q4U8I4 Cluster: Putative uncharacterized protein; n=2;
            Theileria|Rep: Putative uncharacterized protein -
            Theileria annulata
          Length = 1272

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 263  SDHIGQCVMNIVKDFEFEGMTEAVEFGAGLAWRLL 367
            SDH+   + + V +FE E   E VE G+ L W L+
Sbjct: 963  SDHLTNSLFDEVMEFELESPIEDVELGSKLIWSLV 997


>UniRef50_A5L927 Cluster: Transporter, truncation; n=11;
           Streptococcus|Rep: Transporter, truncation -
           Streptococcus pneumoniae SP3-BS71
          Length = 748

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 10  IIRRLENRNKIKNAYAVAYIKLKKKCTLIVASDISSWNLDSRAFLIQLYLCV 165
           ++ R ++   IKN +    I L    TL V S +  W ++   FLI +++ +
Sbjct: 272 VLTRFQDAMTIKNVFTSVSISLVMDITLSVISAVVLWTINQSLFLILVFMVI 323


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,147,266
Number of Sequences: 1657284
Number of extensions: 7295680
Number of successful extensions: 20392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20389
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)