Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2060
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   3.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   3.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   4.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   7.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    24   7.2  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   7.2  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   9.5  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 326 LSCLQTRNPSRYSSHTDQYDLNYFTVN 246
           +S L++++ SRY+SH D   LN +  N
Sbjct: 197 ISHLKSKSRSRYASHPDLQALNTWMTN 223


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 329 PLSCLQTRNPSRYSSHTDQYDLNYF 255
           PL+ ++T NP+ +SS+T   D+ +F
Sbjct: 442 PLATMKTCNPAVFSSNTSLDDMFFF 466


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 139 KRANRDSNLKCPKLQLMYT 83
           K   +DSN+KC K Q++++
Sbjct: 260 KNIKKDSNVKCSKKQILFS 278


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 384 PPSRVASRRQAKPAPNSTASVMPSNSKSFTIF 289
           PPS + S R A P   ++ S  PS+     +F
Sbjct: 473 PPSSINSNRAASPFRPTSVSPQPSSPTKSLLF 504


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 22  LENRNKIKNAYAVAYIKLKKKCTLIVASDISSWNLDSRAF-LIQLYLCVFKNRTVHI 189
           ++  NKI+N+ A  YIK+          ++S W +            C  KNR +H+
Sbjct: 115 IKKYNKIENSIACKYIKIVPLQAHAHEFNMSIWYVALHGIDSASALSCTEKNRALHL 171


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 353 PSRRRIPPPLSCLQT-RNPSRYSSHTDQY 270
           PSR + PPP S L + R+  R+ S  +++
Sbjct: 140 PSRHQSPPPSSVLASQRHHRRHDSELEEF 168


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/15 (60%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
 Frame = +2

Query: 191 FFFL-LTPGYTVVCF 232
           FFFL +TP Y+++CF
Sbjct: 27  FFFLQMTPFYSILCF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,628
Number of Sequences: 5004
Number of extensions: 32799
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)