Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2060
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 31 0.43
10_01_0133 + 1621574-1625779 29 1.3
03_02_0192 + 6295239-6295279,6295548-6295639,6295839-6296024,629... 29 1.7
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651... 28 2.3
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 28 3.0
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 27 5.3
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 27 5.3
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514 27 7.0
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 26 9.2
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 387 GPPSRVASRRQAKPAPNSTASVMPSNSKSFT 295
GPP R A R Q P P+S A S+S S T
Sbjct: 11 GPPPRPAGRAQRPPPPHSVAPKRASSSSSST 41
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 287 MNIVKDFEFEGMTEAVEFGAGLAWRLLATLE 379
+ +K EF GM VE+ +G W L + LE
Sbjct: 921 LETLKSIEFNGMLSMVEWVSGNTWHLFSQLE 951
>03_02_0192 +
6295239-6295279,6295548-6295639,6295839-6296024,
6296531-6296672,6296729-6296849
Length = 193
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 365 ADAKPSRRRIPPPLSCLQTRNPS 297
A+A P R+PPP+ C+++R P+
Sbjct: 7 AEAFPLSSRVPPPVYCMRSRVPN 29
>03_06_0388 +
33564096-33564485,33564642-33564812,33565125-33565145,
33565260-33565467,33566156-33566346,33566465-33566584,
33566703-33566936
Length = 444
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 67 IKLKKKCTLIVASDISSWNLDSRAFLI 147
IKL K TL+ + D+S+WN +R + I
Sbjct: 127 IKLMVKGTLVASPDMSNWNESNRRYWI 153
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 375 RVASRRQAKPAPNSTASVMPSNSKSFTIFI 286
R S A +P+S + V PSNS+ F F+
Sbjct: 584 REGSNNSASSSPDSDSDVHPSNSEGFQCFL 613
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 375 RVASRRQAKPAPNSTASVMPSNS 307
R A RR+A P P AS MP S
Sbjct: 124 RAAPRRRASPEPKGIASSMPKKS 146
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 384 PPSRVASRRQAKPAPNSTASVMPSNSKSFTI 292
PP+ V S + A AP STA+ +P S T+
Sbjct: 98 PPAAVTSVQGAPRAPASTAATVPQGSPRRTV 128
>06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514
Length = 323
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -1
Query: 362 DAKPSRRRIPPPLSCLQTRNPSRYSSH--TDQYDLNYFTVNCHFF*NKLRCIPV 207
DA P PPP SC + Y H +D N + F +K+ IP+
Sbjct: 12 DASPVLSPPPPPSSCCPPAHDDHYLEHQISDIKRANSLMTDSQMFAHKMLLIPL 65
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 58 VAYIKLKKKCTLIVASDISSWNLDSRAFLIQLYLCVF 168
V Y+ + KC + A +SSW+ + ++C+F
Sbjct: 160 VVYMVIGGKCLMKFAESVSSWSRAPQLHHQSYWICIF 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,690
Number of Sequences: 37544
Number of extensions: 198598
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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