Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2060
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      28   2.7  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    26   8.2  

>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 9   DYSQAGKSKQN*KRICRCLHKIKKKVYINCSFGHFKLES 125
           +Y +  K + N K   + + K  ++ +I+CSFG  KL +
Sbjct: 145 NYQELTKQEFNVKNFLKSVSKSCEETFISCSFGREKLHN 183


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 9   DYSQAGKSKQN*KRICRCLHKIKKKVYINCSFGHFKLES 125
           +Y +  K + N K   + + K  ++ +I+CSFG  KL +
Sbjct: 145 NYQELTKQEFNVKNFLKSVSKSCEETFISCSFGREKLHN 183


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
           protein T05A8.2 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 353 PSRRRIPPPLSCLQTRNPSRYSSHTDQY 270
           PS+ +IPP L  ++     RY+S T+++
Sbjct: 149 PSQMKIPPKLPSVRKTKQYRYNSKTEKF 176


>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 384 PPSRVASRRQAKPAPNSTASVMPSNSKSFT 295
           PP  + S R+ K APN + SV  S+  S T
Sbjct: 75  PPKDLISGRKPKGAPNLSGSVPLSHKSSLT 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,491,697
Number of Sequences: 27780
Number of extensions: 192061
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)