Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2060
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   8.7  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = +1

Query: 67  IKLKKKCTLIVASDISSWNLDSRA--------FLIQLYLCVFKNRTVHIIFFFINTG 213
           IK+ KK  +I   D+    ++ R         FL+QL+ C      ++ +  ++N G
Sbjct: 14  IKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGG 70


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 106 PKLQLMYTFFLILCRQRHM 50
           PKLQ+  + F+I   Q+H+
Sbjct: 606 PKLQIALSEFVINPHQQHL 624


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 320 MTEAVEFGAGLAWRLLATL 376
           ++E VE+   + W L  TL
Sbjct: 162 ISEGVEYVGNIRWELAGTL 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,420
Number of Sequences: 438
Number of extensions: 2397
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)