Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2057
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   7.9  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.9  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 152 NPFHLYFILKVFHSYCCNFIKKTCIFYFVSCFIYIFSV 39
           +PF+L+  + V    C +F+  +C   F+S +    SV
Sbjct: 201 HPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSV 238


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 96  HKKNMHILFCVVFYIYFFCSVIYFSL*LFKYE 1
           H  ++ + + ++  IYFF +  YFSL   K+E
Sbjct: 684 HFIHLRVWYVLLHKIYFFIASAYFSLKNEKFE 715


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 191 DISRLRLSRFPTFNPFHLYFILKVFHSYCCNFI 93
           +I+  +++  PTF  +H   + K+F     NF+
Sbjct: 152 EIAEQQMNLMPTFEKYHFKTLNKLFQEAGSNFV 184


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 455 EVPV*TLPFESRIAMFARFICSNTVRVWD 369
           E PV +L F S  ++ A      TVR+WD
Sbjct: 467 EGPVSSLSFNSSGSLLASGSWDKTVRIWD 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,994
Number of Sequences: 5004
Number of extensions: 41227
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)