Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2057
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0095 + 733307-734060,734779-734802,735029-736098                 28   3.4  
06_01_0671 - 4899611-4899829,4900870-4901448                           27   5.9  
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    27   5.9  

>01_01_0095 + 733307-734060,734779-734802,735029-736098
          Length = 615

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 460 YRKCRCELYRSSPGSRCLLASFVQIPSASGTKD 362
           Y   RC LY + PG + +  S V  PS S T D
Sbjct: 106 YHSSRCSLYNAQPG-KIVCCSKVLTPSMSPTND 137


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 462 SIGSAGVNFTVRVPDRDVCSLHLFKYRP 379
           S GSA  NFT+R  D    SL  FK RP
Sbjct: 119 SKGSAAPNFTLRDQDGRAVSLSKFKGRP 146


>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 179 LRLSRFPTFNPFHLYFILKVFHSYCCNFIKKTCIFYFVSCFIYIFS 42
           ++ S+FP   PF  Y    +F S   N  K   + Y V C +  F+
Sbjct: 480 IKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFT 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,744
Number of Sequences: 37544
Number of extensions: 211457
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)