Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2057
         (476 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted ...    23   4.1  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   4.1  

>DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted
           polypeptide protein.
          Length = 125

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = -2

Query: 460 YRKCRCE--LYRSSPGSRCLLASFVQIP 383
           Y +C C     R  PG RC+   F Q P
Sbjct: 84  YAECYCASGFVREYPGGRCIPKLFCQRP 111


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 89  KTCIFYFVSCFIYIFSVV*FTSVCNYS 9
           K    Y V CF+++F+ +   +  NY+
Sbjct: 283 KAIDIYLVMCFVFVFAALLEYAAVNYT 309



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 295 SSYKA*NVYIIFCYIFI 245
           S  KA ++Y++ C++F+
Sbjct: 280 SYVKAIDIYLVMCFVFV 296


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,396
Number of Sequences: 2352
Number of extensions: 8750
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 42095889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)