Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2057
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z93379-7|CAD54132.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 28 4.0
AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 28 4.0
AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 28 4.0
AF026209-5|AAB71279.2| 344|Caenorhabditis elegans Serpentine re... 27 7.0
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 9.2
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 9.2
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 9.2
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 9.2
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 9.2
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 9.2
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 406 LASFVQ-IPSASGTKDVVT*FTAHHVDCNSLCSRNCYYSSYKA*NVYIIFCYIFIMYRNV 230
+ +FV + SA ++VT TA + +SL ++ YY + +IF IF+ Y N
Sbjct: 168 IGTFVAFLSSAFQISNIVTMPTAGFLCESSLGWKSIYYIFG---GITVIFYIIFLWYYND 224
Query: 229 GPNDFRSIDS 200
PND +++ S
Sbjct: 225 TPNDHKNVSS 234
>Z93379-7|CAD54132.1| 188|Caenorhabditis elegans Hypothetical
protein F21H7.12 protein.
Length = 188
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 125 KVFHS-YCCNFIKKTCIFYF--VSCFIYIFSVV 36
++ HS Y C+ I +F F V+C +Y+FS+V
Sbjct: 130 RLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIV 162
>AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine
receptor (62.5 kD)(acr-23) protein.
Length = 545
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 110 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 6
Y N I T + F+S + SV FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279
>AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical
protein Y62H9A.1 protein.
Length = 366
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 42 RKNIYKTRHKIKYACFFYEIATITMKD 122
R N+YKT ++IKY Y IA + + D
Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201
>AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine
receptor protein 23 protein.
Length = 545
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 110 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 6
Y N I T + F+S + SV FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279
>AF026209-5|AAB71279.2| 344|Caenorhabditis elegans Serpentine
receptor, class j protein25 protein.
Length = 344
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 173 LSRFPTFNPFHLYFILKVFHSYCCNFIK 90
+S FP F+P + F + F + C NF K
Sbjct: 288 VSTFPFFDPTAIIFFIPSFRAKCINFGK 315
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 144 PLVFY--FKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIY 28
P++FY +KS + L F ++ I+FC + + +VIY
Sbjct: 52 PILFYELYKSRNSYLRSFSAISLRIIFCCLLVVDLTATVIY 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,029
Number of Sequences: 27780
Number of extensions: 227838
Number of successful extensions: 642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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